View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5273-Insertion-2 (Length: 335)

Name: NF5273-Insertion-2
Description: NF5273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5273-Insertion-2
NF5273-Insertion-2
[»] chr6 (1 HSPs)
chr6 (8-296)||(28699027-28699315)


Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 28699315 - 28699027
Alignment:
Q  8 tttcttactctacacataattgtctaattttagttactgcattatttatttgttttgatccccttcatcttcactttcttcaaacaaccaccnnnnnnnn 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||            
T  28699315 tttcttactctacacataattgtctaattttagttactgcattatttatttgttttgatctccttcatctttactttcttcaaacagccaccttttttct 28699216  T
Q  108 cttggtacatttgcttccaattcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctggtcctcaagttcag 207  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28699215 cttggtccatttgcttccaattcagctgcaacccttaataattgttctctcagccattcaagttccatttgctgctccacaagctggtcctcaagttcag 28699116  T
Q  208 ccttatcggaaatcacatcatccagaatctccatctgctagtttagaggctaattaatattaaagaattcggctaattaatatggaact 296  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  28699115 ccttatcggaaagcacatcatccagaatctccatctgctagtttagaggctaattaatattaaagaactcggctaattaatatggaact 28699027  T

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