View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5273_high_2 (Length: 230)
Name: NF5273_high_2
Description: NF5273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5273_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 4179954 - 4179748
Alignment:
| Q |
17 |
acatgttgtgtatttgtacccatttattaaggaatttttggttgaccaaaacctctgccaagaggaggctacaactaatgccgattgagtatcctccaca |
116 |
Q |
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| T |
4179954 |
acatgttgtgtatttgtacccatttattaaggaatttttggtttaccaaaacctctgccaagaggaggctacaacaaatgccgattgagtatcctccaca |
4179855 |
T |
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| Q |
117 |
tttgaagtttgtcacctgaagnnnnnnnccacatctacaaattaaattgtatatctgatcaaactcaaattcattaaca-----gatacattggacccag |
211 |
Q |
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| T |
4179854 |
tttgaagtttgtcacctgaagaaaaaaaccacatctacaaattaaattgtatatctgatcaaactcaaattcattaacaggtacgatacattggacccag |
4179755 |
T |
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| Q |
212 |
tataatc |
218 |
Q |
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||||||| |
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| T |
4179754 |
tataatc |
4179748 |
T |
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