View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5274-Insertion-1 (Length: 258)
Name: NF5274-Insertion-1
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5274-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 36806419 - 36806169
Alignment:
| Q |
8 |
ggatagccaccaagtaaacctgctgtttctcctgttaccaaattgatttcaggaaatgatgcgtctttctttggattgaaatgctccgagatatttgcat |
107 |
Q |
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| T |
36806419 |
ggatagccaccaagtaaacctgctgtttctcctgttaccaaattgatttcaggaaatgatgcgtctttctttggattgaaatgctccgagatatttgcat |
36806320 |
T |
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| Q |
108 |
tgcaaagtactcgaattgcaatgaaatacaattccttcacataccatgttgcccttggtccctatccacaaaatcatttttcatgaaaaatacaaaaaat |
207 |
Q |
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| T |
36806319 |
tgcaaagtactcgaattgcaatgaaatacaattccttcacataccatgttgcccttggtccctatccacaaaatcatttttcatgaaaaataaaaaaaat |
36806220 |
T |
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| Q |
208 |
taatcaacctataaagcacggatacggacacatacaccaga-acagaaatgg |
258 |
Q |
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| T |
36806219 |
tagtc-acctatgaagcacagatacggacacagacaccagacacagaaatgg |
36806169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 8 - 244
Target Start/End: Original strand, 36514808 - 36515042
Alignment:
| Q |
8 |
ggatagccaccaagtaaacctgctgtttctcctgttaccaaattgatttcaggaaatgatgcgtctttctttggattgaaatgctccgagatatttgcat |
107 |
Q |
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| T |
36514808 |
ggatagccaccaagtaaacctgttgtttctcctgataccaaattgatttcaggaaatgatgcatctttctttggattgaaatgctctgagatatttgcat |
36514907 |
T |
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| Q |
108 |
tgcaaagtactcgaattgcaatgaaatacaattccttcacataccatgttgcccttggtccctatccacaaaatcatttttcatgaaaaatacaaaaaat |
207 |
Q |
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| T |
36514908 |
tgcaaagtactcgaattgcaatgaaatacaattccttcacgtaccatgttgcccttggtccctatgcacaaaatcatttttcatgaaaaata-aaaatat |
36515006 |
T |
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| Q |
208 |
taatcaacctataaagcacggatacggacacatacac |
244 |
Q |
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| T |
36515007 |
tagtcaa-ctatgaagcacagatacggacacagacac |
36515042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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