View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5274_high_1 (Length: 694)

Name: NF5274_high_1
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5274_high_1
NF5274_high_1
[»] chr6 (2 HSPs)
chr6 (185-632)||(1514550-1514991)
chr6 (13-120)||(1514377-1514484)
[»] chr5 (5 HSPs)
chr5 (388-514)||(43222118-43222244)
chr5 (392-512)||(9465739-9465859)
chr5 (450-514)||(14733608-14733672)
chr5 (353-512)||(35650275-35650434)
chr5 (444-512)||(3440888-3440956)
[»] chr2 (1 HSPs)
chr2 (348-512)||(373123-373287)
[»] chr7 (7 HSPs)
chr7 (444-512)||(27386897-27386965)
chr7 (380-514)||(675979-676113)
chr7 (453-514)||(37134378-37134439)
chr7 (464-514)||(31322032-31322082)
chr7 (473-514)||(1193657-1193698)
chr7 (353-514)||(20400009-20400166)
chr7 (474-526)||(23264006-23264058)
[»] chr3 (4 HSPs)
chr3 (451-514)||(43624333-43624396)
chr3 (459-515)||(36011001-36011057)
chr3 (475-512)||(778853-778890)
chr3 (450-502)||(24704885-24704937)
[»] chr8 (5 HSPs)
chr8 (450-512)||(11180238-11180300)
chr8 (444-502)||(16314002-16314060)
chr8 (450-514)||(21492829-21492893)
chr8 (444-514)||(15901499-15901569)
chr8 (469-501)||(28449846-28449878)
[»] chr1 (2 HSPs)
chr1 (444-505)||(5446779-5446840)
chr1 (465-515)||(24413242-24413292)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 185 - 632
Target Start/End: Original strand, 1514550 - 1514991
Alignment:
Q  185 cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1514550 cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag 1514649  T
Q  285 caaatgaggatacagtgagcagtgagcacgatagaacgagttgagatcctcttcgnnnnnnnatcttatccatttcttctacttgaaaagataacaacac 384  Q
    |||| ||||||||||||||||       |||||||||||||||||||||||||||       | ||||||||||||             ||||||||||     
T  1514650 caaaggaggatacagtgagca-------cgatagaacgagttgagatcctcttcgtttttttaacttatccatttc-------------gataacaacat 1514729  T
Q  385 aagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatt 484  Q
    || ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  1514730 aaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatttcgttcataattacaatctccatt 1514829  T
Q  485 tatttttataaatagagatgatctcaact-ccgatagaactacctcaac-------------nnnnnnnnctacctcaacaattaattatgacatcttca 570  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||||||                     ||||||||||||||||||||||||||||||    
T  1514830 tatttttataaatagagatgatctcaactcccaataaaactacctcaacaattgcaccaaaaaaataaaactacctcaacaattaattatgacatcttca 1514929  T
Q  571 tgcaaattcgcagtcttgctccatccgccaaaaaccatgcagttgtgagatctcttataaac 632  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1514930 tgcaaattcgcagtcttgctccatccgccaaaaaccatgcaattgtgagatctcttataaac 1514991  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 1514377 - 1514484
Alignment:
Q  13 aatatacatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1514377 aatatacatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaag 1514476  T
Q  113 aaagaacc 120  Q
    ||| ||||    
T  1514477 aaaaaacc 1514484  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 388 - 514
Target Start/End: Original strand, 43222118 - 43222244
Alignment:
Q  388 aaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttat 487  Q
    ||||||||| |||||||||| || |||| || ||||||||  ||| || || ||  ||||| ||||||||||||| |||||||| |||||||||||||||    
T  43222118 aaattttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctctttcataatgacaatctccatttat 43222217  T
Q  488 ttttataaatagagatgatctcaactc 514  Q
    |||||||||| ||||  ||||||||||    
T  43222218 ttttataaatggagagtatctcaactc 43222244  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 392 - 512
Target Start/End: Original strand, 9465739 - 9465859
Alignment:
Q  392 tttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttattttt 491  Q
    ||||| |||||||||| || ||| ||||||||||||  ||  |  || ||| |||||  |||||||||||| ||||||||  ||||||||||||||||||    
T  9465739 tttgaaaataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctatctctttcataatggcaatctccatttattttt 9465838  T
Q  492 ataaatagagatgatctcaac 512  Q
    ||||||  ||| |||||||||    
T  9465839 ataaatgaagaggatctcaac 9465859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 14733608 - 14733672
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||||||||||| ||| |||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  14733608 ttgtgtctatctctttcctaatgacaatcttcatttatttttataaatggagaggatctcaactc 14733672  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 512
Target Start/End: Original strand, 35650275 - 35650434
Alignment:
Q  353 tccatttcttctacttgaaaagataacaacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattg 452  Q
    ||||||||||  | ||||| |||||  |||| || ||| ||| | |||||||||| || ||| ||||||||||||| ||  || || ||| ||||| |||    
T  35650275 tccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacctattttttg 35650374  T
Q  453 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    |||||||||  ||  ||||  ||||||||||||||||| |||||| |||| |||||||||    
T  35650375 tgtctatcttttttctaattgcaatctccatttattttaataaatggagaggatctcaac 35650434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 3440888 - 3440956
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||| ||||||||||||| ||| ||||   |||||||||||||||| |||||| |||| |||||||||    
T  3440888 tattttttgtgtctatctctttcctaattgtaatctccatttattttaataaatggagaggatctcaac 3440956  T

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Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 348 - 512
Target Start/End: Complemental strand, 373287 - 373123
Alignment:
Q  348 tcttatccatttcttctacttgaaaagataacaacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatt 447  Q
    |||| ||||||||||| | ||  ||||||||  | |||| |||| || | |||||||||| || |||| |||||||||||| ||  || || ||| ||||    
T  373287 tcttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgacccaccacctatt 373188  T
Q  448 tattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    | ||||||||||||  ||||||||  |||||||||||||||||||||||| |||| |||||||||    
T  373187 ttttgtgtctatctttttcataattgcaatctccatttatttttataaatggagaggatctcaac 373123  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 27386965 - 27386897
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||    
T  27386965 tattttttgtgtctatctctttcataataacaatctccatttatttttataaatggagaggatctcaac 27386897  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 380 - 514
Target Start/End: Complemental strand, 676113 - 675979
Alignment:
Q  380 aacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatct 479  Q
    ||||||| |||| |||| |||||||||| || |||  | |||||||||  ||  | ||| ||||||||| |||||| |||||| | |||||| ||||||     
T  676113 aacacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgtttatctcttacataatgacaatcg 676014  T
Q  480 ccatttatttttataaatagagatgatctcaactc 514  Q
     |||||||||||||||||||||| |||||||||||    
T  676013 tcatttatttttataaatagagaggatctcaactc 675979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 37134378 - 37134439
Alignment:
Q  453 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||||| |||| |||||||||||    
T  37134378 tgtctatctctatcataatgacaatctccgtttatttttataaatggagaggatctcaactc 37134439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 514
Target Start/End: Complemental strand, 31322082 - 31322032
Alignment:
Q  464 ttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    |||||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  31322082 ttcataatgacaatcttcatttatttttataaatggagaggatctcaactc 31322032  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 1193698 - 1193657
Alignment:
Q  473 acaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  1193698 acaatatccatttatttttataaatggagatgatcccaactc 1193657  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 353 - 514
Target Start/End: Original strand, 20400009 - 20400166
Alignment:
Q  353 tccatttcttctacttgaaaagataacaacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattg 452  Q
    ||||||||||||| || || ||||||  ||| || |||| || | |||||||||| || |||  | |||||||||  ||| || || |||  |||| |||    
T  20400009 tccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagacccaccactaatttgttg 20400108  T
Q  453 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    |||||||||| |||||||| | |||    |||||||| ||||||| |||| |||||||||||    
T  20400109 tgtctatctctttcataatgaaaat----atttatttatataaatggagaggatctcaactc 20400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 23264058 - 23264006
Alignment:
Q  474 caatctccatttatttttataaatagagatgatctcaactccgatagaactac 526  Q
    |||||||||||||||||||||||| || | ||||||||||  | |||||||||    
T  23264058 caatctccatttatttttataaatggataagatctcaacttagttagaactac 23264006  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 451 - 514
Target Start/End: Complemental strand, 43624396 - 43624333
Alignment:
Q  451 tgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  43624396 tgtgtctatctcttttataatgacaatctccatttatttttataaatagagaggatctcaactc 43624333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 36011001 - 36011057
Alignment:
Q  459 tctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactcc 515  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  36011001 tctctttcataattacaatctccatttatttttataaattgagaggatctcaactcc 36011057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 778890 - 778853
Alignment:
Q  475 aatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  778890 aatctccatttatttttataaatggagaagatctcaac 778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 24704937 - 24704885
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 502  Q
    |||| |||||||| |||||||  |||||||||| |||||||||||||| ||||    
T  24704937 ttgtatctatctctttcataacgacaatctccaattatttttataaatggaga 24704885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 11180300 - 11180238
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||||||||||| ||| |||  |||||||| |||||||||||||||| ||||||||||||||    
T  11180300 ttgtgtctatctctttcttaaagacaatctcaatttatttttataaatggagatgatctcaac 11180238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 16314002 - 16314060
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 502  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||| |||||| ||||    
T  16314002 tattttttgtatctatctctttcataatgacaatctccatttattttaataaatggaga 16314060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 21492829 - 21492893
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||||||||||| ||| ||||  ||||||||||||||||||||||||  | | |||||||||||    
T  21492829 ttgtgtctatctctttcctaatggcaatctccatttatttttataaatgaaaaagatctcaactc 21492893  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 15901499 - 15901569
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||| |||| |||||||| ||||||||  ||||||||||||||||| ||||||  ||| ||||| |||||    
T  15901499 tattttttgtatctatctctttcataatggcaatctccatttattttaataaatgaagaagatcttaactc 15901569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 28449878 - 28449846
Alignment:
Q  469 aatcacaatctccatttatttttataaatagag 501  Q
    ||||| |||||||||||||||||||||||||||    
T  28449878 aatcataatctccatttatttttataaatagag 28449846  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 505
Target Start/End: Original strand, 5446779 - 5446840
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatga 505  Q
    ||||| ||||||||||||| ||  | |  |||||||||||||||||||||||||||||||||    
T  5446779 tattttttgtgtctatctcttttcttacgacaatctccatttatttttataaatagagatga 5446840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 24413292 - 24413242
Alignment:
Q  465 tcataatcacaatctccatttatttttataaatagagatgatctcaactcc 515  Q
    ||||||| ||||| | ||||||||||||||||| |||| ||||||||||||    
T  24413292 tcataatgacaatatacatttatttttataaatggagaggatctcaactcc 24413242  T

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