View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5274_high_2 (Length: 657)
Name: NF5274_high_2
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5274_high_2 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 313 - 644
Target Start/End: Complemental strand, 39071681 - 39071350
Alignment:
| Q |
313 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaannnnnnngactttcactctaagattgacacttgctctaatccatgcttctttt |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39071681 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaatttttttgactttcactctaagattgacacttgctctaatccatgcttctttt |
39071582 |
T |
|
| Q |
413 |
acattccattttttcattttcatttaccatataggttacgaattaactctcattgatttgactttatgcatgttgcatgattaatacattatgggcctat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
39071581 |
acattccattttttcattttcatttaccatataggttacgaattaactctcattgatttgactttatgcatgttgcatgattaatacatcatgggcctat |
39071482 |
T |
|
| Q |
513 |
tnnnnnnnntccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcatttttatttgcatataaaaaactaag |
612 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39071481 |
taaaaaaaatccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcatttttatttgcatataaaaaactaag |
39071382 |
T |
|
| Q |
613 |
agtgctatacaagccatttcattttccctttg |
644 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |
|
|
| T |
39071381 |
agtgctatacaggccatttcattttccctttg |
39071350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 17 - 262
Target Start/End: Original strand, 23914041 - 23914287
Alignment:
| Q |
17 |
atatatagggctccaatactacctacttttattttgcattttgattttgatgattgatgctcgtgcaggctatatggccaatttttatttttggaattat |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23914041 |
atatatagggctcaaatactacctacttttattttgcattttgattttgatgattgatgcccgtgcaggctatatggccaatttttatttttggaattat |
23914140 |
T |
|
| Q |
117 |
atgggttacttttgatttctaacgtcatggacaaatatgaggat-atgaaccagcgagtgatcatgaaattttccgtatgaaataaaatgaagacaatcc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23914141 |
atgggttacttttgatttctaacgtcatggacaaatatgaggataatgaaccagcgagtgatcatgaaattttccgtatgaaataaaatgaagacaatct |
23914240 |
T |
|
| Q |
216 |
aaaatagtttaatttatatacatcgtaaatgtagtattacacatgca |
262 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23914241 |
aaaatagtttaatttatatacattgtaaatgtagtattacacatgca |
23914287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 313 - 595
Target Start/End: Complemental strand, 43506004 - 43505719
Alignment:
| Q |
313 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaannnnnnngactttcactctaagattgacacttgctctaatccatgcttctttt |
412 |
Q |
| |
|
||||||| |||||||||| |||||| | ||||||||||||||| || ||||| ||||||||||||||| ||||||||||| ||||||| |||| |
|
|
| T |
43506004 |
attctaaactacactttgttgatgtatttttataacaaagctcccaatttttttgacttacactctaagattgacgcttgctctaatacatgcttgtttt |
43505905 |
T |
|
| Q |
413 |
acattccattttttcattttcatttaccatataggttacgaattaactct-cattgatttga---ctttatgcatgttgcatgattaatacattatgggc |
508 |
Q |
| |
|
||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||| | |
|
|
| T |
43505904 |
acattccat-ttttcattttcatttcccatataggttacgaattaactctccattgatttgacttctttatgcatgttgcatgattaatacttcatggac |
43505806 |
T |
|
| Q |
509 |
ctattnnnnnnnntccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcatttttattt |
595 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
43505805 |
ctattaaaaaaaatccatcggttatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcttttttattt |
43505719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 574 - 644
Target Start/End: Complemental strand, 43505711 - 43505641
Alignment:
| Q |
574 |
gatattctaatcatttttatttgcatataaaaaactaagagtgctatacaagccatttcattttccctttg |
644 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43505711 |
gatattctaatcatttttatttgcatataaaaaactaagagtgctatacaggccatttcattttccctttg |
43505641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 375 - 513
Target Start/End: Original strand, 49618 - 49759
Alignment:
| Q |
375 |
ctctaagattgacacttgctctaatccatgcttcttttacattccattttt-----tcattttcatttaccatataggttacgaattaactctc-attga |
468 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||| ||| |||||||| |||||||||||| ||||| ||||||||||||||||| ||| | |
|
|
| T |
49618 |
ctctaagattgacacttgctctaatacatgttt-ttttgcatgccatttttcattttcattttcatttcccataa--gttacgaattaactctccattaa |
49714 |
T |
|
| Q |
469 |
tttgactttatgcatgttgcatgattaatacattatgggcctatt |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
49715 |
tttgactttatgcatgttgcatgattaatacatcatgggtctatt |
49759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 576 - 644
Target Start/End: Original strand, 348090 - 348158
Alignment:
| Q |
576 |
tattctaatcatttttatttgcatataaaaaactaagagtgctatacaagccatttcattttccctttg |
644 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
348090 |
tattctaatcatttttatttgcatatataaaactaagagtgctatataggccatttcattttccctttg |
348158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 440 - 513
Target Start/End: Original strand, 347945 - 348019
Alignment:
| Q |
440 |
catataggttacgaattaactctc-attgatttgactttatgcatgttgcatgattaatacattatgggcctatt |
513 |
Q |
| |
|
|||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
347945 |
catataagttacgaattaactctccattaatttgactttatgcatgttgcatgattaatacatcatgggactatt |
348019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 313 - 500
Target Start/End: Original strand, 42124283 - 42124474
Alignment:
| Q |
313 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaannnnnnngactttcactctaagattgacacttgctctaatccatgcttcttt- |
411 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||| ||| || |||||| | | | |||| |||||||||||| || |||| |||||| |
|
|
| T |
42124283 |
attctaacctacactttgctgacgtgtcattctaacaaaactctcaatttttgtgacttt-atttttagatcgacacttgctctgatgcatgtttcttta |
42124381 |
T |
|
| Q |
412 |
---tacattccattttttcattttcatttaccatataggttacgaattaactct-cattgatttgactttatgcatgttgcatgattaataca |
500 |
Q |
| |
|
||||| ||| ||||||||||||||| ||||||| |||||||| |||||| |||| |||| |||||||||||||| |||||||||||| |
|
|
| T |
42124382 |
atttacatgccagtttttcattttcattacccatataagttacgaaacaactctccattaatttcactttatgcatgttttatgattaataca |
42124474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University