View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5274_high_4 (Length: 342)

Name: NF5274_high_4
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5274_high_4
NF5274_high_4
[»] chr1 (8 HSPs)
chr1 (1-159)||(26620043-26620201)
chr1 (184-326)||(26619796-26619937)
chr1 (186-251)||(47763422-47763487)
chr1 (186-248)||(39238712-39238774)
chr1 (197-248)||(25162709-25162760)
chr1 (186-248)||(38021248-38021310)
chr1 (195-248)||(40678819-40678872)
chr1 (195-251)||(13870127-13870183)
[»] chr2 (5 HSPs)
chr2 (175-248)||(41195968-41196041)
chr2 (174-218)||(5029125-5029169)
chr2 (201-248)||(21970491-21970538)
chr2 (201-247)||(44187701-44187747)
chr2 (174-246)||(17223423-17223493)
[»] chr7 (3 HSPs)
chr7 (174-249)||(22660736-22660811)
chr7 (173-218)||(7908735-7908780)
chr7 (184-248)||(41139083-41139147)
[»] chr4 (5 HSPs)
chr4 (174-248)||(2565257-2565331)
chr4 (186-248)||(9692958-9693020)
chr4 (186-248)||(28520768-28520830)
chr4 (186-248)||(48968247-48968309)
chr4 (174-219)||(51077892-51077937)
[»] chr5 (4 HSPs)
chr5 (186-251)||(6447517-6447582)
chr5 (201-246)||(4674867-4674912)
chr5 (186-219)||(29106075-29106108)
chr5 (174-219)||(33729803-33729848)
[»] chr8 (4 HSPs)
chr8 (186-248)||(2696529-2696591)
chr8 (186-248)||(2800015-2800077)
chr8 (186-223)||(17987486-17987523)
chr8 (195-248)||(38790619-38790672)
[»] chr6 (2 HSPs)
chr6 (186-248)||(9064862-9064924)
chr6 (186-248)||(14981739-14981801)
[»] chr3 (9 HSPs)
chr3 (201-251)||(3955299-3955349)
chr3 (186-248)||(9624979-9625041)
chr3 (186-248)||(14868681-14868743)
chr3 (186-248)||(27183718-27183780)
chr3 (186-248)||(47191369-47191431)
chr3 (195-248)||(7448409-7448462)
chr3 (195-248)||(7456551-7456604)
chr3 (204-249)||(44976569-44976614)
chr3 (175-223)||(37059468-37059516)


Alignment Details
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 26620201 - 26620043
Alignment:
Q  1 ttgctgcacaaaaatatgaacattttttatgtatttaaaatattaaaatgactattggacaccaaattttgatatcaaatacaatatcatttaatttttg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26620201 ttgctgcacaaaaatatgaacattttttatatatttaaaatattaaaatgactattggacaccaaattttgatatcaaatacaatgtcatttaatttttg 26620102  T
Q  101 tcagtattccggaaatgtgtgatagtgttgtagtagaagataaaaaatgagaaatattt 159  Q
    || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  26620101 tcggtattccggaaatgtgtgatattgttgtagtagaaaataaaaaatgagaaatattt 26620043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 184 - 326
Target Start/End: Complemental strand, 26619937 - 26619796
Alignment:
Q  184 gattcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacgggaaccgagaaataaaaatttatagatacattgtttg 283  Q
    ||||||||| ||||| |||||||||||||||||||||||  ||| ||||||| |||||||||| | ||||| ||||||||||||||||||||||||||||    
T  26619937 gattcgaacctcggcatctgcatataataatgcattatca-tgtcaactgatttatgctcacgtggaccgaaaaataaaaatttatagatacattgtttg 26619839  T
Q  284 tgttttgacgttcaattaatattgttgtatccaaatttcaagt 326  Q
    |||||||| ||||||||||||||||||||||||||||||||||    
T  26619838 tgttttgatgttcaattaatattgttgtatccaaatttcaagt 26619796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 47763422 - 47763487
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacgggaac 251  Q
    |||||||| ||||| ||||||||||||||||||| ||||||  ||||||  |||||||||||||||    
T  47763422 ttcgaactccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacgggaac 47763487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 39238774 - 39238712
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||||| |||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  39238774 ttcgaacctcggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 39238712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 248
Target Start/End: Original strand, 25162709 - 25162760
Alignment:
Q  197 gcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  25162709 gcctctgcatataataatgcattgtccctgctaactgagctatgctcacggg 25162760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 38021310 - 38021248
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||| ||||| ||||||||||||||||||| ||| ||  ||||||  ||||||||||||    
T  38021310 ttcgaactccggcccctgcatataataatgcattgtccttgccaactgagctatgctcacggg 38021248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 40678872 - 40678819
Alignment:
Q  195 cggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  40678872 cggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 40678819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 13870127 - 13870183
Alignment:
Q  195 cggcctctgcatataataatgcattatccctgtgaactgatatatgctcacgggaac 251  Q
    ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||| |||||    
T  13870127 cggcccctgcatataataatgcattgtccctgccaactgagctatgctcacaggaac 13870183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 41195968 - 41196041
Alignment:
Q  175 ggtgtttgagattcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||| | |||||||||| |||||||||||||||| |||||||||||||||| ||||||  ||||||||||||    
T  41195968 ggtgttcgggattcgaactccggcctctgcatataacaatgcattatccctgtcaactgagctatgctcacggg 41196041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 5029125 - 5029169
Alignment:
Q  174 gggtgtttgagattcgaacttcggcctctgcatataataatgcat 218  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||    
T  5029125 gggtgttcgagattcgaactccggcctctgcatataataatgcat 5029169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Original strand, 21970491 - 21970538
Alignment:
Q  201 ctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||||||||||||||||| ||||||| ||||||  ||||||||||||    
T  21970491 ctgcatataataatgcattgtccctgtcaactgagctatgctcacggg 21970538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 44187747 - 44187701
Alignment:
Q  201 ctgcatataataatgcattatccctgtgaactgatatatgctcacgg 247  Q
    ||||||||||||||||||||||||||  ||||||  |||||||||||    
T  44187747 ctgcatataataatgcattatccctgccaactgaactatgctcacgg 44187701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 246
Target Start/End: Original strand, 17223423 - 17223493
Alignment:
Q  174 gggtgtttgagattcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacg 246  Q
    |||||| |||| ||||||||||| |||||  |||||||||||  |||||||||| ||||||  ||||||||||    
T  17223423 gggtgtatgaggttcgaacttcgacctctatatataataatg--ttatccctgtcaactgagttatgctcacg 17223493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 22660811 - 22660736
Alignment:
Q  174 gggtgtttgagattcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggga 249  Q
    ||||||||| | |||||||  ||||| || ||||||| |||||||||||||||| ||||||  |||||||||||||    
T  22660811 gggtgtttggggttcgaaccccggcccctacatataacaatgcattatccctgtcaactgaactatgctcacggga 22660736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 7908780 - 7908735
Alignment:
Q  173 agggtgtttgagattcgaacttcggcctctgcatataataatgcat 218  Q
    |||||||||| | ||||||| || ||||||||||||||||||||||    
T  7908780 agggtgtttggggttcgaacctcagcctctgcatataataatgcat 7908735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 248
Target Start/End: Complemental strand, 41139147 - 41139083
Alignment:
Q  184 gattcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||||  || || ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  41139147 gattcgaaccccgacccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 41139083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 2565331 - 2565257
Alignment:
Q  174 gggtgtttgagattcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||||| | |||||||||| || || |||||||||| |||||||| ||||||| ||||||  ||||||||||||    
T  2565331 gggtgttcgggattcgaactccgacccctgcatataacaatgcattgtccctgtcaactgagctatgctcacggg 2565257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 9693020 - 9692958
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||||||||||  ||||||  ||||||||||||    
T  9693020 ttcgaaccccggcccctgcatataataatgcattatccctgccaactgagctatgctcacggg 9692958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 28520768 - 28520830
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  28520768 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 28520830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 48968247 - 48968309
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  48968247 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgaactatgctcacggg 48968309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 51077937 - 51077892
Alignment:
Q  174 gggtgtttgagattcgaacttcggcctctgcatataataatgcatt 219  Q
    ||||||| |||||||||||| || || |||||||||||||||||||    
T  51077937 gggtgttcgagattcgaactccgacccctgcatataataatgcatt 51077892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 6447517 - 6447582
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacgggaac 251  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  |||||||||||||||    
T  6447517 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttatgctcacgggaac 6447582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 246
Target Start/End: Original strand, 4674867 - 4674912
Alignment:
Q  201 ctgcatataataatgcattatccctgtgaactgatatatgctcacg 246  Q
    ||||||||||||||||||| ||||||| ||||||  ||||||||||    
T  4674867 ctgcatataataatgcattgtccctgtcaactgagctatgctcacg 4674912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 29106075 - 29106108
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcatt 219  Q
    |||||||||||||| |||||||||||||||||||    
T  29106075 ttcgaacttcggcccctgcatataataatgcatt 29106108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 33729848 - 33729803
Alignment:
Q  174 gggtgtttgagattcgaacttcggcctctgcatataataatgcatt 219  Q
    |||||| ||||||||||||  ||||| |||||||||||||||||||    
T  33729848 gggtgtctgagattcgaaccccggcccctgcatataataatgcatt 33729803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 2696591 - 2696529
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  2696591 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagttatgctcacggg 2696529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 2800077 - 2800015
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  2800077 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 2800015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 223
Target Start/End: Original strand, 17987486 - 17987523
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatcc 223  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  17987486 ttcgaactccggcccctgcatataataatgcattatcc 17987523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 38790619 - 38790672
Alignment:
Q  195 cggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  38790619 cggcccctgcatataataatgcattgtccctgccaactgagttatgctcacggg 38790672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 9064924 - 9064862
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  9064924 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 9064862  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 14981739 - 14981801
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  14981739 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 14981801  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 3955349 - 3955299
Alignment:
Q  201 ctgcatataataatgcattatccctgtgaactgatatatgctcacgggaac 251  Q
    ||||||||||||||||||| ||||||| || |||  |||||||||||||||    
T  3955349 ctgcatataataatgcattgtccctgtcaattgagctatgctcacgggaac 3955299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 9625041 - 9624979
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  9625041 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 9624979  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 14868743 - 14868681
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  14868743 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 14868681  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 27183718 - 27183780
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||  ||||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  27183718 ttcgaaccccggcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 27183780  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 47191431 - 47191369
Alignment:
Q  186 ttcgaacttcggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    |||||||| | ||| ||||||||||||||||||| ||||||  ||||||  ||||||||||||    
T  47191431 ttcgaactccagcccctgcatataataatgcattgtccctgccaactgagctatgctcacggg 47191369  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 7448409 - 7448462
Alignment:
Q  195 cggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||| ||||||||||||||||||| ||||| | ||||||  ||||||||||||    
T  7448409 cggcccctgcatataataatgcattgtccctatcaactgagctatgctcacggg 7448462  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 248
Target Start/End: Original strand, 7456551 - 7456604
Alignment:
Q  195 cggcctctgcatataataatgcattatccctgtgaactgatatatgctcacggg 248  Q
    ||||| ||||||||||||||||||| ||||| | ||||||  ||||||||||||    
T  7456551 cggcccctgcatataataatgcattgtccctatcaactgagctatgctcacggg 7456604  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 44976614 - 44976569
Alignment:
Q  204 catataataatgcattatccctgtgaactgatatatgctcacggga 249  Q
    |||||||||||||||| ||||||| ||||||  |||||||||||||    
T  44976614 catataataatgcattgtccctgtcaactgagttatgctcacggga 44976569  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 37059516 - 37059468
Alignment:
Q  175 ggtgtttgagattcgaacttcggcctctgcatataataatgcattatcc 223  Q
    |||||| | |||||||||| | ||| |||||||||||||||||||||||    
T  37059516 ggtgttcgggattcgaactccagcccctgcatataataatgcattatcc 37059468  T

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