View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5274_low_1 (Length: 727)
Name: NF5274_low_1
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5274_low_1 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 383 - 714
Target Start/End: Complemental strand, 39071681 - 39071350
Alignment:
| Q |
383 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaannnnnnngactttcactctaagattgacacttgctctaatccatgcttctttt |
482 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39071681 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaatttttttgactttcactctaagattgacacttgctctaatccatgcttctttt |
39071582 |
T |
|
| Q |
483 |
acattccattttttcattttcatttaccatataggttacgaattaactctcattgatttgactttatgcatgttgcatgattaatacattatgggcctat |
582 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39071581 |
acattccattttttcattttcatttaccatataggttacgaattaactctcattgatttgactttatgcatgttgcatgattaatacatcatgggcctat |
39071482 |
T |
|
| Q |
583 |
tnnnnnnnntccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcatttttatttgcatataaaaaactaag |
682 |
Q |
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| T |
39071481 |
taaaaaaaatccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcatttttatttgcatataaaaaactaag |
39071382 |
T |
|
| Q |
683 |
agtgctatacaagccatttcattttccctttg |
714 |
Q |
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||||||||||| |||||||||||||||||||| |
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| T |
39071381 |
agtgctatacaggccatttcattttccctttg |
39071350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 40 - 332
Target Start/End: Original strand, 23913994 - 23914287
Alignment:
| Q |
40 |
aggtaattatctattttcaatataatcatcaaaagaaactttccattatatatagggctccaatactacctacttttattttgcattttgattttgatga |
139 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
23913994 |
aggtaattatctattttcaatataatcatcaaaagaaactttccattatatatagggctcaaatactacctacttttattttgcattttgattttgatga |
23914093 |
T |
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| Q |
140 |
ttgatgctcgtgcaggctatatggccaatttttatttttggaattatatgggttacttttgatttctaacgtcatggacaaatatgaggat-atgaacca |
238 |
Q |
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| T |
23914094 |
ttgatgcccgtgcaggctatatggccaatttttatttttggaattatatgggttacttttgatttctaacgtcatggacaaatatgaggataatgaacca |
23914193 |
T |
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| Q |
239 |
gcgagtgatcatgaaattttccgtatgaaataaaatgaagacaatccaaaatagtttaatttatatacatcgtaaatgtagtattacacatgca |
332 |
Q |
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| T |
23914194 |
gcgagtgatcatgaaattttccgtatgaaataaaatgaagacaatctaaaatagtttaatttatatacattgtaaatgtagtattacacatgca |
23914287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 383 - 665
Target Start/End: Complemental strand, 43506004 - 43505719
Alignment:
| Q |
383 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaannnnnnngactttcactctaagattgacacttgctctaatccatgcttctttt |
482 |
Q |
| |
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||||||| |||||||||| |||||| | ||||||||||||||| || ||||| ||||||||||||||| ||||||||||| ||||||| |||| |
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| T |
43506004 |
attctaaactacactttgttgatgtatttttataacaaagctcccaatttttttgacttacactctaagattgacgcttgctctaatacatgcttgtttt |
43505905 |
T |
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| Q |
483 |
acattccattttttcattttcatttaccatataggttacgaattaactct-cattgatttga---ctttatgcatgttgcatgattaatacattatgggc |
578 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||| | |
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| T |
43505904 |
acattccat-ttttcattttcatttcccatataggttacgaattaactctccattgatttgacttctttatgcatgttgcatgattaatacttcatggac |
43505806 |
T |
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| Q |
579 |
ctattnnnnnnnntccatcggtcatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcatttttattt |
665 |
Q |
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| T |
43505805 |
ctattaaaaaaaatccatcggttatattttatgtttgggatgatcggttacattttttacttcttgatattctaatcttttttattt |
43505719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 644 - 714
Target Start/End: Complemental strand, 43505711 - 43505641
Alignment:
| Q |
644 |
gatattctaatcatttttatttgcatataaaaaactaagagtgctatacaagccatttcattttccctttg |
714 |
Q |
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| T |
43505711 |
gatattctaatcatttttatttgcatataaaaaactaagagtgctatacaggccatttcattttccctttg |
43505641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 445 - 583
Target Start/End: Original strand, 49618 - 49759
Alignment:
| Q |
445 |
ctctaagattgacacttgctctaatccatgcttcttttacattccattttt-----tcattttcatttaccatataggttacgaattaactctc-attga |
538 |
Q |
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||||||||||||||||||||||||| |||| || |||| ||| |||||||| |||||||||||| ||||| ||||||||||||||||| ||| | |
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| T |
49618 |
ctctaagattgacacttgctctaatacatgttt-ttttgcatgccatttttcattttcattttcatttcccataa--gttacgaattaactctccattaa |
49714 |
T |
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| Q |
539 |
tttgactttatgcatgttgcatgattaatacattatgggcctatt |
583 |
Q |
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| T |
49715 |
tttgactttatgcatgttgcatgattaatacatcatgggtctatt |
49759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 646 - 714
Target Start/End: Original strand, 348090 - 348158
Alignment:
| Q |
646 |
tattctaatcatttttatttgcatataaaaaactaagagtgctatacaagccatttcattttccctttg |
714 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||||| |
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| T |
348090 |
tattctaatcatttttatttgcatatataaaactaagagtgctatataggccatttcattttccctttg |
348158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 510 - 583
Target Start/End: Original strand, 347945 - 348019
Alignment:
| Q |
510 |
catataggttacgaattaactctc-attgatttgactttatgcatgttgcatgattaatacattatgggcctatt |
583 |
Q |
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|||||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
347945 |
catataagttacgaattaactctccattaatttgactttatgcatgttgcatgattaatacatcatgggactatt |
348019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 383 - 570
Target Start/End: Original strand, 42124283 - 42124474
Alignment:
| Q |
383 |
attctaacctacactttgctgatgtgtccttataacaaagctcctaannnnnnngactttcactctaagattgacacttgctctaatccatgcttcttt- |
481 |
Q |
| |
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|||||||||||||||||||||| ||||| || ||||||| ||| || |||||| | | | |||| |||||||||||| || |||| |||||| |
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| T |
42124283 |
attctaacctacactttgctgacgtgtcattctaacaaaactctcaatttttgtgacttt-atttttagatcgacacttgctctgatgcatgtttcttta |
42124381 |
T |
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| Q |
482 |
---tacattccattttttcattttcatttaccatataggttacgaattaactct-cattgatttgactttatgcatgttgcatgattaataca |
570 |
Q |
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||||| ||| ||||||||||||||| ||||||| |||||||| |||||| |||| |||| |||||||||||||| |||||||||||| |
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| T |
42124382 |
atttacatgccagtttttcattttcattacccatataagttacgaaacaactctccattaatttcactttatgcatgttttatgattaataca |
42124474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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