View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5274_low_11 (Length: 250)
Name: NF5274_low_11
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5274_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 8177512 - 8177283
Alignment:
| Q |
1 |
caaaaacaaaagtggtttggttttatatatgacgataataaatccatcaaggatcactattcgagcattcaaggaaagtgacatagatgatgtgttatta |
100 |
Q |
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| T |
8177512 |
caaaaacaaaagtggtttggttt-atatatggcaataataaatccatcaaggatcactattcgagcattcaaggaaagtgacatagatgatgtgttatta |
8177414 |
T |
|
| Q |
101 |
tggctaggagatgaaagagtaattgaggatactcgattggaaacttgtaattcaaagaaagaaggtttggatttcataaaaaatgaatgcatttacccaa |
200 |
Q |
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| T |
8177413 |
tggctaggagatgaaagagtaattgaggatactcgattggaaacttgtaattcaaagaaagaagctttggatttcataaaaaatgaatgcatttacccaa |
8177314 |
T |
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| Q |
201 |
tccgccaatcaatatgtcttgatgaccactc |
231 |
Q |
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| T |
8177313 |
tccgccaatcaatatgtcttgatgaccactc |
8177283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 8169756 - 8169695
Alignment:
| Q |
171 |
atttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactct |
232 |
Q |
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| T |
8169756 |
atttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactct |
8169695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 232
Target Start/End: Complemental strand, 8172392 - 8172326
Alignment:
| Q |
166 |
tttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactct |
232 |
Q |
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|||| |||||||||| || || || ||||||||| ||| |||||||||||||||||||| |||||| |
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| T |
8172392 |
tttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactct |
8172326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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