View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5274_low_12 (Length: 223)
Name: NF5274_low_12
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5274_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 13519028 - 13519112
Alignment:
| Q |
125 |
gattatatccatgtctttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttg |
209 |
Q |
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| T |
13519028 |
gattatatccatgtgtttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttg |
13519112 |
T |
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Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 125 - 209
Target Start/End: Original strand, 13608561 - 13608645
Alignment:
| Q |
125 |
gattatatccatgtctttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttg |
209 |
Q |
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| T |
13608561 |
gattatatccatgtgtttccattctcttgtcttctaattcatcttctattgtttgagtattaaaaatgtttgagggttcattttg |
13608645 |
T |
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Target: chr1 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 5681712 - 5681793
Alignment:
| Q |
20 |
aatatgtcggctgattcaataaggaaaaaagctacacaagttggtgctagagttgatgctcttgaaactaattctctaatta |
101 |
Q |
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| T |
5681712 |
aatatgtcggctgattcaataaggaaaaaagctgcacaagttggtgctagagttgatgctattgaaactaattctctaatta |
5681793 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 47038292 - 47038233
Alignment:
| Q |
23 |
atgtcggctgattcaataaggaaaaaagctacacaagttggtgctagagttgatgctctt |
82 |
Q |
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| T |
47038292 |
atgtctgctgatttaatacgcaaaaaagctaccaaagtcggtgctagagttgatgctctt |
47038233 |
T |
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