View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5274_low_2 (Length: 694)

Name: NF5274_low_2
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5274_low_2
NF5274_low_2
[»] chr6 (2 HSPs)
chr6 (185-632)||(1514550-1514991)
chr6 (13-120)||(1514377-1514484)
[»] chr5 (5 HSPs)
chr5 (388-514)||(43222118-43222244)
chr5 (392-512)||(9465739-9465859)
chr5 (450-514)||(14733608-14733672)
chr5 (353-512)||(35650275-35650434)
chr5 (444-512)||(3440888-3440956)
[»] chr2 (1 HSPs)
chr2 (348-512)||(373123-373287)
[»] chr7 (7 HSPs)
chr7 (444-512)||(27386897-27386965)
chr7 (380-514)||(675979-676113)
chr7 (453-514)||(37134378-37134439)
chr7 (464-514)||(31322032-31322082)
chr7 (473-514)||(1193657-1193698)
chr7 (353-514)||(20400009-20400166)
chr7 (474-526)||(23264006-23264058)
[»] chr3 (4 HSPs)
chr3 (451-514)||(43624333-43624396)
chr3 (459-515)||(36011001-36011057)
chr3 (475-512)||(778853-778890)
chr3 (450-502)||(24704885-24704937)
[»] chr8 (5 HSPs)
chr8 (450-512)||(11180238-11180300)
chr8 (444-502)||(16314002-16314060)
chr8 (450-514)||(21492829-21492893)
chr8 (444-514)||(15901499-15901569)
chr8 (469-501)||(28449846-28449878)
[»] chr1 (2 HSPs)
chr1 (444-505)||(5446779-5446840)
chr1 (465-515)||(24413242-24413292)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 185 - 632
Target Start/End: Original strand, 1514550 - 1514991
Alignment:
Q  185 cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1514550 cacctgattacgacgtaaacttcatcaatgaattagtcacaaaccaataaattatttaagcattaaaccttgcacgtttaaatcaatcgaaatttataag 1514649  T
Q  285 caaatgaggatacagtgagcagtgagcacgatagaacgagttgagatcctcttcgnnnnnnnatcttatccatttcttctacttgaaaagataacaacac 384  Q
    |||| ||||||||||||||||       |||||||||||||||||||||||||||       | ||||||||||||             ||||||||||     
T  1514650 caaaggaggatacagtgagca-------cgatagaacgagttgagatcctcttcgtttttttaacttatccatttc-------------gataacaacat 1514729  T
Q  385 aagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatt 484  Q
    || ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  1514730 aaaaaattttgaaaataattaatcatagtggaattcatttaataataaaactcatcacatatttattgtgtctatttcgttcataattacaatctccatt 1514829  T
Q  485 tatttttataaatagagatgatctcaact-ccgatagaactacctcaac-------------nnnnnnnnctacctcaacaattaattatgacatcttca 570  Q
    ||||||||||||||||||||||||||||| || ||| ||||||||||||                     ||||||||||||||||||||||||||||||    
T  1514830 tatttttataaatagagatgatctcaactcccaataaaactacctcaacaattgcaccaaaaaaataaaactacctcaacaattaattatgacatcttca 1514929  T
Q  571 tgcaaattcgcagtcttgctccatccgccaaaaaccatgcagttgtgagatctcttataaac 632  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  1514930 tgcaaattcgcagtcttgctccatccgccaaaaaccatgcaattgtgagatctcttataaac 1514991  T

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Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 13 - 120
Target Start/End: Original strand, 1514377 - 1514484
Alignment:
Q  13 aatatacatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaag 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1514377 aatatacatgagtacctacaaacgatacatatatcttttgacccgtatctgttcatctaaatctataaaagaaccattttctcatggagtatgttaaaag 1514476  T
Q  113 aaagaacc 120  Q
    ||| ||||    
T  1514477 aaaaaacc 1514484  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 388 - 514
Target Start/End: Original strand, 43222118 - 43222244
Alignment:
Q  388 aaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttat 487  Q
    ||||||||| |||||||||| || |||| || ||||||||  ||| || || ||  ||||| ||||||||||||| |||||||| |||||||||||||||    
T  43222118 aaattttgaaaataattaatgatggtgggatccatttaatgataagacccaccatctattttttgtgtctatctctttcataatgacaatctccatttat 43222217  T
Q  488 ttttataaatagagatgatctcaactc 514  Q
    |||||||||| ||||  ||||||||||    
T  43222218 ttttataaatggagagtatctcaactc 43222244  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 392 - 512
Target Start/End: Original strand, 9465739 - 9465859
Alignment:
Q  392 tttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatctccatttattttt 491  Q
    ||||| |||||||||| || ||| ||||||||||||  ||  |  || ||| |||||  |||||||||||| ||||||||  ||||||||||||||||||    
T  9465739 tttgaaaataattaatgatggtgaaattcatttaatgataggatccaccacctattttatgtgtctatctctttcataatggcaatctccatttattttt 9465838  T
Q  492 ataaatagagatgatctcaac 512  Q
    ||||||  ||| |||||||||    
T  9465839 ataaatgaagaggatctcaac 9465859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 14733608 - 14733672
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||||||||||| ||| |||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  14733608 ttgtgtctatctctttcctaatgacaatcttcatttatttttataaatggagaggatctcaactc 14733672  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 353 - 512
Target Start/End: Original strand, 35650275 - 35650434
Alignment:
Q  353 tccatttcttctacttgaaaagataacaacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattg 452  Q
    ||||||||||  | ||||| |||||  |||| || ||| ||| | |||||||||| || ||| ||||||||||||| ||  || || ||| ||||| |||    
T  35650275 tccatttctttcatttgaagagatataaacataaaaaaatttaaaaataattaatgatggtgaaattcatttaataataggacccaccacctattttttg 35650374  T
Q  453 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    |||||||||  ||  ||||  ||||||||||||||||| |||||| |||| |||||||||    
T  35650375 tgtctatcttttttctaattgcaatctccatttattttaataaatggagaggatctcaac 35650434  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 444 - 512
Target Start/End: Original strand, 3440888 - 3440956
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||| ||||||||||||| ||| ||||   |||||||||||||||| |||||| |||| |||||||||    
T  3440888 tattttttgtgtctatctctttcctaattgtaatctccatttattttaataaatggagaggatctcaac 3440956  T

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Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 348 - 512
Target Start/End: Complemental strand, 373287 - 373123
Alignment:
Q  348 tcttatccatttcttctacttgaaaagataacaacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatt 447  Q
    |||| ||||||||||| | ||  ||||||||  | |||| |||| || | |||||||||| || |||| |||||||||||| ||  || || ||| ||||    
T  373287 tcttctccatttcttccatttagaaagataaagatacaaaaaatcttaaaaataattaataatggtgggattcatttaataatatgacccaccacctatt 373188  T
Q  448 tattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    | ||||||||||||  ||||||||  |||||||||||||||||||||||| |||| |||||||||    
T  373187 ttttgtgtctatctttttcataattgcaatctccatttatttttataaatggagaggatctcaac 373123  T

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Target: chr7 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 444 - 512
Target Start/End: Complemental strand, 27386965 - 27386897
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||||||||||| |||| |||||||||    
T  27386965 tattttttgtgtctatctctttcataataacaatctccatttatttttataaatggagaggatctcaac 27386897  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 380 - 514
Target Start/End: Complemental strand, 676113 - 675979
Alignment:
Q  380 aacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattgtgtctatctcgttcataatcacaatct 479  Q
    ||||||| |||| |||| |||||||||| || |||  | |||||||||  ||  | ||| ||||||||| |||||| |||||| | |||||| ||||||     
T  676113 aacacaaaaaatcttgaaaataattaatgatggtgagactcatttaatgataggaatcaccacatattttttgtgtttatctcttacataatgacaatcg 676014  T
Q  480 ccatttatttttataaatagagatgatctcaactc 514  Q
     |||||||||||||||||||||| |||||||||||    
T  676013 tcatttatttttataaatagagaggatctcaactc 675979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 37134378 - 37134439
Alignment:
Q  453 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||||||||  ||||||| ||||||||| ||||||||||||||| |||| |||||||||||    
T  37134378 tgtctatctctatcataatgacaatctccgtttatttttataaatggagaggatctcaactc 37134439  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 464 - 514
Target Start/End: Complemental strand, 31322082 - 31322032
Alignment:
Q  464 ttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    |||||||| ||||||| ||||||||||||||||| |||| |||||||||||    
T  31322082 ttcataatgacaatcttcatttatttttataaatggagaggatctcaactc 31322032  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 1193698 - 1193657
Alignment:
Q  473 acaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  1193698 acaatatccatttatttttataaatggagatgatcccaactc 1193657  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 353 - 514
Target Start/End: Original strand, 20400009 - 20400166
Alignment:
Q  353 tccatttcttctacttgaaaagataacaacacaagaaattttgacaataattaatcatagtggaattcatttaatattaaaactcatcacatatttattg 452  Q
    ||||||||||||| || || ||||||  ||| || |||| || | |||||||||| || |||  | |||||||||  ||| || || |||  |||| |||    
T  20400009 tccatttcttctatttaaacagataaagacataaaaaatcttaaaaataattaatgatcgtgtgactcatttaatgataagacccaccactaatttgttg 20400108  T
Q  453 tgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    |||||||||| |||||||| | |||    |||||||| ||||||| |||| |||||||||||    
T  20400109 tgtctatctctttcataatgaaaat----atttatttatataaatggagaggatctcaactc 20400166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 474 - 526
Target Start/End: Complemental strand, 23264058 - 23264006
Alignment:
Q  474 caatctccatttatttttataaatagagatgatctcaactccgatagaactac 526  Q
    |||||||||||||||||||||||| || | ||||||||||  | |||||||||    
T  23264058 caatctccatttatttttataaatggataagatctcaacttagttagaactac 23264006  T

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Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 451 - 514
Target Start/End: Complemental strand, 43624396 - 43624333
Alignment:
Q  451 tgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    |||||||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||||    
T  43624396 tgtgtctatctcttttataatgacaatctccatttatttttataaatagagaggatctcaactc 43624333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 459 - 515
Target Start/End: Original strand, 36011001 - 36011057
Alignment:
Q  459 tctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactcc 515  Q
    |||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||    
T  36011001 tctctttcataattacaatctccatttatttttataaattgagaggatctcaactcc 36011057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 512
Target Start/End: Complemental strand, 778890 - 778853
Alignment:
Q  475 aatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  778890 aatctccatttatttttataaatggagaagatctcaac 778853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 450 - 502
Target Start/End: Complemental strand, 24704937 - 24704885
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 502  Q
    |||| |||||||| |||||||  |||||||||| |||||||||||||| ||||    
T  24704937 ttgtatctatctctttcataacgacaatctccaattatttttataaatggaga 24704885  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 450 - 512
Target Start/End: Complemental strand, 11180300 - 11180238
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaac 512  Q
    ||||||||||||| ||| |||  |||||||| |||||||||||||||| ||||||||||||||    
T  11180300 ttgtgtctatctctttcttaaagacaatctcaatttatttttataaatggagatgatctcaac 11180238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 444 - 502
Target Start/End: Original strand, 16314002 - 16314060
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagaga 502  Q
    ||||| |||| |||||||| |||||||| |||||||||||||||||| |||||| ||||    
T  16314002 tattttttgtatctatctctttcataatgacaatctccatttattttaataaatggaga 16314060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 450 - 514
Target Start/End: Original strand, 21492829 - 21492893
Alignment:
Q  450 ttgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||||||||||| ||| ||||  ||||||||||||||||||||||||  | | |||||||||||    
T  21492829 ttgtgtctatctctttcctaatggcaatctccatttatttttataaatgaaaaagatctcaactc 21492893  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 444 - 514
Target Start/End: Original strand, 15901499 - 15901569
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatgatctcaactc 514  Q
    ||||| |||| |||||||| ||||||||  ||||||||||||||||| ||||||  ||| ||||| |||||    
T  15901499 tattttttgtatctatctctttcataatggcaatctccatttattttaataaatgaagaagatcttaactc 15901569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 469 - 501
Target Start/End: Complemental strand, 28449878 - 28449846
Alignment:
Q  469 aatcacaatctccatttatttttataaatagag 501  Q
    ||||| |||||||||||||||||||||||||||    
T  28449878 aatcataatctccatttatttttataaatagag 28449846  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 444 - 505
Target Start/End: Original strand, 5446779 - 5446840
Alignment:
Q  444 tatttattgtgtctatctcgttcataatcacaatctccatttatttttataaatagagatga 505  Q
    ||||| ||||||||||||| ||  | |  |||||||||||||||||||||||||||||||||    
T  5446779 tattttttgtgtctatctcttttcttacgacaatctccatttatttttataaatagagatga 5446840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 465 - 515
Target Start/End: Complemental strand, 24413292 - 24413242
Alignment:
Q  465 tcataatcacaatctccatttatttttataaatagagatgatctcaactcc 515  Q
    ||||||| ||||| | ||||||||||||||||| |||| ||||||||||||    
T  24413292 tcataatgacaatatacatttatttttataaatggagaggatctcaactcc 24413242  T

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