View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5274_low_5 (Length: 370)

Name: NF5274_low_5
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5274_low_5
NF5274_low_5
[»] chr3 (3 HSPs)
chr3 (11-357)||(29487826-29488182)
chr3 (178-256)||(53925635-53925713)
chr3 (280-328)||(53925570-53925618)
[»] chr4 (1 HSPs)
chr4 (286-328)||(25061467-25061509)
[»] chr1 (1 HSPs)
chr1 (280-328)||(43983882-43983930)
[»] chr2 (2 HSPs)
chr2 (178-247)||(36873840-36873908)
chr2 (280-328)||(36873767-36873815)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 11 - 357
Target Start/End: Complemental strand, 29488182 - 29487826
Alignment:
Q  11 agaatatgaaggatcagctactagtaaattcacgatgcgtgctacaaaccatgcatcgcgcatttgaaggaaatttagaagtgtccgaccaatggtgcat 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  29488182 agaaaatgaaggatcagctactagtaaattcacgatgcgtgctacaaacgatgcatcgcgcatttgaagaaaatttagaagtgtccgaccaatggtgcat 29488083  T
Q  111 gtgtgctgcgtgc------------------aggactagaagcattaccaagtgttcaactacttcgtgttattattattttttgttaattaggaaaatt 192  Q
    | |||||||||||                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29488082 gcgtgctgcgtgcttgagccaagcatcgtgtaggactagaagcattaccaagtgttcaactacttcgtgttattattattttttgttaattaggaaaatt 29487983  T
Q  193 aacatcaatttattcacatggtgaaagatgatttttatgaatatttaaaataattgtaactgattggaattttnnnnnnnnnnnnnnttatttccaggaa 292  Q
    ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||               ||| |||||| ||    
T  29487982 aacatcaatttatacacacggtgaaagatgaattttatgaatatttaaaataattgtaactgattggaattt-------aaaaaaaatta-ttccagtaa 29487891  T
Q  293 cttaaattgttatgcaagcacttttcttaaacattcatttacaaaaggatttccatcatcatatt 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29487890 cttaaattgttatgcaagcacttttcttaaacattcatttacaaaaggatttccatcatcatatt 29487826  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 53925713 - 53925635
Alignment:
Q  178 ttaattaggaaaattaacatcaatttattcacatggtgaaagatgatttttatgaatatttaaaataattgtaactgat 256  Q
    |||||||||||||| ||| || ||||||||||| | ||||| || |||||||| |||||||||||||||| ||| ||||    
T  53925713 ttaattaggaaaatgaacctccatttattcacacgatgaaacataatttttataaatatttaaaataattataattgat 53925635  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 53925618 - 53925570
Alignment:
Q  280 ttatttccaggaacttaaattgttatgcaagcacttttcttaaacattc 328  Q
    ||||| |||| ||||||||||||||| ||| ||||||||||||| ||||    
T  53925618 ttattcccagaaacttaaattgttatccaaacacttttcttaaatattc 53925570  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 286 - 328
Target Start/End: Complemental strand, 25061509 - 25061467
Alignment:
Q  286 ccaggaacttaaattgttatgcaagcacttttcttaaacattc 328  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  25061509 ccaggaacttaaattgttatgcaaacacttttcttaaacattc 25061467  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 43983882 - 43983930
Alignment:
Q  280 ttatttccaggaacttaaattgttatgcaagcacttttcttaaacattc 328  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||||||||    
T  43983882 ttattcccaggaacttaaattgttatccaaacacttttcttaaacattc 43983930  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 247
Target Start/End: Complemental strand, 36873908 - 36873840
Alignment:
Q  178 ttaattaggaaaattaacatcaatttattcacatggtgaaagatgatttttatgaatatttaaaataatt 247  Q
    |||||||||||||| |||||| |||||| |||| | ||||| || |||||||| ||||||||||||||||    
T  36873908 ttaattaggaaaatgaacatccatttatacacacgatgaaacataatttttat-aatatttaaaataatt 36873840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 36873815 - 36873767
Alignment:
Q  280 ttatttccaggaacttaaattgttatgcaagcacttttcttaaacattc 328  Q
    ||||| |||||||||||||||||||| ||| ||||||| ||||||||||    
T  36873815 ttattcccaggaacttaaattgttatccaaacacttttattaaacattc 36873767  T

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