View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5274_low_7 (Length: 314)
Name: NF5274_low_7
Description: NF5274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5274_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 47893422 - 47893696
Alignment:
| Q |
23 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatgcatag---cat--tgatatt |
117 |
Q |
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| T |
47893422 |
aggtagaagccaataattaccattataaagcaagccaagtagacttactcaaaccacagttaaatttttcaaaccacatacataggcacatgatattatt |
47893521 |
T |
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| Q |
118 |
catttctttctatatatagctagctagctacacgagtcacactgcaatcaattactcctctcactcactcatacaccattccttaatccatccgaaacca |
217 |
Q |
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| T |
47893522 |
catttctttctatatatagc----tagctacacgagtcacactgcaatcaattactcctctcagtcactcatacaccattccttaatccatccgaaacca |
47893617 |
T |
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| Q |
218 |
tgatcaaaattccaaaccttaaaatccctgagtggaacacaacacattacgaggaagtaccattctccaaccatttcat |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
47893618 |
tgatcaaaattccaaaccttaaaatccctgagtggaacacaacacaatacgaggaagtaacattctccaaccatttcat |
47893696 |
T |
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