View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275-Insertion-1 (Length: 888)
Name: NF5275-Insertion-1
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275-Insertion-1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 295 - 888
Target Start/End: Complemental strand, 37107524 - 37106931
Alignment:
| Q |
295 |
aagggggaaagcttatcgactgcaatattagcacaaaaattctacccaattattaaagcaacagatgctaaattggcaagtgcaacaaatgaagatgcgt |
394 |
Q |
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| T |
37107524 |
aagggagaaagcttatcagctgccagattagcagacaagttctacccaattattaaagcaacagatgctaaattggcaagtgcaacaaatgaagatgcgt |
37107425 |
T |
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| Q |
395 |
aagtatcaaacaactgaatatcattgctgaatcagtatttacatttggcataaacacaacgctataatagtgagtatagtttatatgaagctaatgtaat |
494 |
Q |
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| T |
37107424 |
aagtatcaaacaactgaatatcattgctgaatcagtatttacatttggcataaacacaacgctataatagtgagtatagtttatatgaagctaatgtaat |
37107325 |
T |
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| Q |
495 |
attaacgagttcaataattattgcagcgtactttgccagaatggaactctggatcccatgaaggtgaagggtaagatagtattatgcctgagaggaataa |
594 |
Q |
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| T |
37107324 |
attaacgagttcaataattattgcagcgtactttgccagaatggaactctggaccccaagaaggtgaagggtaagatagtattatgcctgagaggaataa |
37107225 |
T |
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| Q |
595 |
atgcaagagtggacaagggagagcaagctcttctagctggtgcagtaggaatggtccttgccaatgataagactactggaaatgaaattatagctgatcc |
694 |
Q |
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| T |
37107224 |
atgcaagagtggacaagggagagcaagctcttctagctggtgcagtaggaatggtccttgccaatgataagactactggaaatgaaattatagctgatcc |
37107125 |
T |
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| Q |
695 |
tcatgttcttcctgcttctcacatcaatttctctgatggtgtagaagtctttcattatatcaactcttccaagtaagaaatctagcattctatatttttg |
794 |
Q |
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| T |
37107124 |
tcatgttcttcctgcttctcacatcaatttctctgatggtgtagaagtctttcattatgtcaactcttccaagtaagaaatctatcattctagtttggtt |
37107025 |
T |
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| Q |
795 |
tggtgtttaattagaccgaaaaaatatataacacttaaaacttgatcgtttggacttaatttttaggtctccagtggcttatattacacatcca |
888 |
Q |
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| T |
37107024 |
tggtctttgattagagcaaaaaaaaatataacacttaaaacttgatcattttgacttaaattttaggtctccagtggcttatattacacatcca |
37106931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 7 - 130
Target Start/End: Complemental strand, 37108264 - 37108141
Alignment:
| Q |
7 |
atgctactgcagaaaatcttgctccttggtatatcacagtcggtgccagtacaatggatagagagttcgctagttatgttcttctacgcaacggtttaag |
106 |
Q |
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| T |
37108264 |
atgctactgcatcaaatctagctccttggtatatcacagttggtgccagcacaatggatagagagttccctagttatgttgttcttggtaacaatttaac |
37108165 |
T |
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| Q |
107 |
cttcaaggtttgtctccttttcta |
130 |
Q |
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| T |
37108164 |
cttcaaggtttgtctctttttcta |
37108141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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