View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275-Insertion-4 (Length: 659)

Name: NF5275-Insertion-4
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275-Insertion-4
NF5275-Insertion-4
[»] chr6 (11 HSPs)
chr6 (441-634)||(32672440-32672635)
chr6 (6-125)||(32671095-32671212)
chr6 (193-374)||(32672244-32672437)
chr6 (553-659)||(32708451-32708552)
chr6 (430-523)||(28601367-28601460)
chr6 (123-179)||(32672164-32672219)
chr6 (123-167)||(32670976-32671020)
chr6 (548-630)||(28601521-28601605)
chr6 (387-449)||(32703576-32703638)
chr6 (478-523)||(32708340-32708385)
chr6 (631-659)||(32672801-32672829)
[»] chr7 (1 HSPs)
chr7 (7-49)||(32028533-32028575)
[»] scaffold0240 (1 HSPs)
scaffold0240 (3-52)||(10539-10588)
[»] scaffold0330 (1 HSPs)
scaffold0330 (7-52)||(14754-14799)


Alignment Details
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 441 - 634
Target Start/End: Original strand, 32672440 - 32672635
Alignment:
Q  441 aatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaataaagcagtgtggttcaattgtagtttatt 540  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  32672440 aatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaagaaagcagtgtggttcaattgtagtttact 32672539  T
Q  541 gtccaattgagcggtgaagatacttcccacattcaatt--ccccctcatttttcacaattacttctgatggaaaccaacttgataacaataataat 634  Q
    |||||||||||||||||||||||||||||||||| | |    ||||||  ||||||||||||||||||| ||||||||||||||||||||||||||    
T  32672540 gtccaattgagcggtgaagatacttcccacattccagtaataccctcaggtttcacaattacttctgattgaaaccaacttgataacaataataat 32672635  T

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Target: chr6; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 6 - 125
Target Start/End: Complemental strand, 32671212 - 32671095
Alignment:
Q  6 catgtgttgttgtgtgtggaatgcagagagttattatgcatgctttagcatatattatgtgagaaatattgtttgcatggaaaaggaaacaaacacatcc 105  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  32671212 catgtgttgttgtgtgtggaatgcagagagttattatgcatggcttagcatat--tatgtgagaaatattgtttgcatggaaaaggaaacaaacacatcc 32671115  T
Q  106 aaacaagcacgcctaagaaa 125  Q
    ||||||||||||||||||||    
T  32671114 aaacaagcacgcctaagaaa 32671095  T

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Target: chr6; HSP #3
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 193 - 374
Target Start/End: Original strand, 32672244 - 32672437
Alignment:
Q  193 ctcatgtaaggggatggaatgataatgaactatttattgtcaaaagtattaagannnnnnnnnnnatttactcagcccattggt--------------aa 278  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||           |||||||||||||||| ||              ||    
T  32672244 ctcatgtaaggggatggaatgatcatgaactatttattgtcaaaagtattaagattttttttt--atttactcagcccatttgttagttacggattataa 32672341  T
Q  279 aaaagttatcttaacattcaatcatttatgaattattttttagagatttttataaaaagcgtaattaattatgtttgtctaccttaatactttttt 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32672342 aaaagttatcttaacattcaatcatttatgaattattttttagagatttttataaaaagcgtaattaattatgtttgtctaccataatactttttt 32672437  T

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Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 553 - 659
Target Start/End: Original strand, 32708451 - 32708552
Alignment:
Q  553 ggtgaagatacttcccacattcaattccccctcatttttcacaattacttctgatggaaaccaacttgataacaataataatggacttattggtgagact 652  Q
    ||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32708451 ggtgaagatacttcccacattc-----cccctcatttttcacaattacttctgatggaaaccaacttgataacaataataatggacttattggtgagact 32708545  T
Q  653 gtccaac 659  Q
    |||||||    
T  32708546 gtccaac 32708552  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 430 - 523
Target Start/End: Original strand, 28601367 - 28601460
Alignment:
Q  430 atttcgtttctaatatatttttgtgaattttcaattgcataggctttcaacacaagtcagaacaacatgttgatacttgaataaagcagtgtgg 523  Q
    |||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||| || ||||| ||||||    
T  28601367 atttcgtttctaatgtatttttgtgaattttcaaatgtataggctttcaacacaagtcaaaacaacatgttgatacttcaagaaagctgtgtgg 28601460  T

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Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 32672164 - 32672219
Alignment:
Q  123 aaacatagatgatcaatattttagttactcttcacaactcatgtaaggggatttact 179  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  32672164 aaacatagatgatcaatattt-agttactcttcacaactcatgtaaggggatttact 32672219  T

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Target: chr6; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 32671020 - 32670976
Alignment:
Q  123 aaacatagatgatcaatattttagttactcttcacaactcatgta 167  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  32671020 aaacatagatgatcaatattttagttactcttcacaactcatgta 32670976  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 548 - 630
Target Start/End: Original strand, 28601521 - 28601605
Alignment:
Q  548 tgagcggtgaagatacttcccacattcaatt--ccccctcatttttcacaattacttctgatggaaaccaacttgataacaataa 630  Q
    |||| |||||||||||||||||||||| | |  | ||||||  ||||||||| |||||||||||||||  |||||||||||||||    
T  28601521 tgagtggtgaagatacttcccacattccagtaacaccctcaggtttcacaatcacttctgatggaaacacacttgataacaataa 28601605  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 387 - 449
Target Start/End: Original strand, 32703576 - 32703638
Alignment:
Q  387 tttcaaaagttgtaacaattagacccttgtttgccggattttcatttcgtttctaatatattt 449  Q
    ||||||||| | ||||||||| ||||||||| |||| ||||||||||| |||||||| |||||    
T  32703576 tttcaaaagctataacaattaaacccttgttcgccgaattttcatttcatttctaatgtattt 32703638  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 478 - 523
Target Start/End: Original strand, 32708340 - 32708385
Alignment:
Q  478 aacacaagtcagaacaacatgttgatacttgaataaagcagtgtgg 523  Q
    ||||| |||||||||||||||||||||||| || ||||| ||||||    
T  32708340 aacactagtcagaacaacatgttgatacttcaagaaagctgtgtgg 32708385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 631 - 659
Target Start/End: Original strand, 32672801 - 32672829
Alignment:
Q  631 taatggacttattggtgagactgtccaac 659  Q
    |||||||||||||||||||||||||||||    
T  32672801 taatggacttattggtgagactgtccaac 32672829  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 49
Target Start/End: Original strand, 32028533 - 32028575
Alignment:
Q  7 atgtgttgttgtgtgtggaatgcagagagttattatgcatgct 49  Q
    ||||||||||||||||||| |||||||||||||||||||||||    
T  32028533 atgtgttgttgtgtgtggagtgcagagagttattatgcatgct 32028575  T

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Target: scaffold0240 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 10588 - 10539
Alignment:
Q  3 caacatgtgttgttgtgtgtggaatgcagagagttattatgcatgcttta 52  Q
    |||||||  |||||||||||||| ||||||||||||||||||||||||||    
T  10588 caacatgaattgttgtgtgtggagtgcagagagttattatgcatgcttta 10539  T

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Target: scaffold0330 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 14799 - 14754
Alignment:
Q  7 atgtgttgttgtgtgtggaatgcagagagttattatgcatgcttta 52  Q
    |||||||||||||| | ||||||||| |||||||||||||||||||    
T  14799 atgtgttgttgtgttttgaatgcagaaagttattatgcatgcttta 14754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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