View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275-Insertion-5 (Length: 386)

Name: NF5275-Insertion-5
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275-Insertion-5
NF5275-Insertion-5
[»] chr1 (5 HSPs)
chr1 (6-386)||(46934451-46934831)
chr1 (182-384)||(46927583-46927785)
chr1 (139-384)||(11106244-11106489)
chr1 (173-283)||(11113092-11113202)
chr1 (223-384)||(41108312-41108473)


Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 6 - 386
Target Start/End: Complemental strand, 46934831 - 46934451
Alignment:
Q  6 caattattacacctcattgaawacaaggaaattaagtgataaacaatttaataaatcttgagaggaaaaagaaaaaggactatctaatgtattagacata 105  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  46934831 caattattacacctcattgaaaacaaggaaattaagtgataaacaatttaataaatcttgagaggaaaaagaaaaaggactatctaatgtattagacatg 46934732  T
Q  106 caaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46934731 caaaagaatgacactttatttgcttattcggacaggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatct 46934632  T
Q  206 tctggtttcatgtcaccttcaagcttccaatcaaacgagttgactaacgaccccaacattaacagcagcatcctattagccaattgtaagccagggcata 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46934631 tctggtttcatgtcaccttcaagcttccaatcaaacgagttgactaacgaccccaacattaacagcagcatcctattagccaattgtaagccagggcata 46934532  T
Q  306 ttcgtcgtccagcaccaaatggtgcaagctcaaaattccggcctttgacatcaatgtctgatcccaagaacctttctgggg 386  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46934531 ttcgtcgtccagcaccaaatggtacaagctcaaaattccggcctttgacatcaatgtctgatcccaagaacctttctgggg 46934451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 182 - 384
Target Start/End: Complemental strand, 46927785 - 46927583
Alignment:
Q  182 aatttatcattcatgtccatatcttctggtttcatgtcaccttcaagcttccaatcaaacgagttgactaacgaccccaacattaacagcagcatcctat 281  Q
    |||||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||||| ||||| ||||| || |||||||||||||  | ||||||||    
T  46927785 aatttatcatccatatccatatcttctggtttcatgccaccttcaagctcccaatcaaaagagttaactaatgaacccaacattaacaataacatcctat 46927686  T
Q  282 tagccaattgtaagccagggcatattcgtcgtccagcaccaaatggtgcaagctcaaaattccggcctttgacatcaatgtctgatcccaagaacctttc 381  Q
    |||||||||| || ||||| || ||||  |  ||| |||| |||||  |||||||||||||||  |||||||||||||| || || || || ||||||||    
T  46927685 tagccaattgcaaaccaggacaaattctcctaccaccaccgaatggcacaagctcaaaattccttcctttgacatcaatatcagaccctaaaaacctttc 46927586  T
Q  382 tgg 384  Q
    |||    
T  46927585 tgg 46927583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 139 - 384
Target Start/End: Original strand, 11106244 - 11106489
Alignment:
Q  139 aggaacaactcgaaggggttgtgccttttgcaaggtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcaccttcaagcttccaatca 238  Q
    |||||||| |||||||||||| |||||||| |  ||||| || |||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||    
T  11106244 aggaacaattcgaaggggttgagccttttgtagagtaatcccaaatttatcatccatgttcatatcttctggtttcatgccaccttcaagctcccaatca 11106343  T
Q  239 aacgagttgactaacgaccccaacattaacagcagcatcctattagccaattgtaagccagggcatattcgtcgtccagcaccaaatggtgcaagctcaa 338  Q
    || ||||| |  |  || |||||||||||||  | |||||||||||||||||| || || || || ||||  |  ||| |||||||||| |||| ||||     
T  11106344 aatgagttaatcagtgaacccaacattaacattaacatcctattagccaattgcaaacctggacaaattctcctcccaccaccaaatggagcaacctcat 11106443  T
Q  339 aattccggcctttgacatcaatgtctgatcccaagaacctttctgg 384  Q
    ||||||  ||||| |||||||| || |||||||  |||||||||||    
T  11106444 aattccttcctttcacatcaatatccgatcccataaacctttctgg 11106489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 173 - 283
Target Start/End: Complemental strand, 11113202 - 11113092
Alignment:
Q  173 gtaatgccgaatttatcattcatgtccatatcttctggtttcatgtcaccttcaagcttccaatcaaacgagttgactaacgaccccaacattaacagca 272  Q
    ||||| || |||||||||| ||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||| |  |  || |||||||||||||  |    
T  11113202 gtaatcccaaatttatcatccatgttcatatcttctggtttcatgccaccttcaagctcccaatcaaatgagttaatcagtgaacccaacattaacatta 11113103  T
Q  273 gcatcctatta 283  Q
     ||||||||||    
T  11113102 acatcctatta 11113092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 41108473 - 41108312
Alignment:
Q  223 ttcaagcttccaatcaaacgagttgactaacgaccccaacattaacagcagcatcctattagccaattgtaagccagggcatattcgtcgtccagcacca 322  Q
    |||||| ||||||||||| |||||||  || || |||||||| ||  ||| |||||||  ||| | | || ||||||| ||||| |||| ||||  |||     
T  41108473 ttcaagtttccaatcaaaggagttgatcaatgatcccaacatcaaatgcaacatcctaacagcaagtggtgagccaggacatatacgtcttccactaccg 41108374  T
Q  323 aatggtgcaagctcaaaattccggcctttgacatcaatgtctgatcccaagaacctttctgg 384  Q
    || |||| ||||| |||||  || |||||||||||||| || || ||||| || ||||||||    
T  41108373 aacggtgtaagcttaaaatgtcgacctttgacatcaatttcagaacccaaaaatctttctgg 41108312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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