View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275-Insertion-6 (Length: 339)

Name: NF5275-Insertion-6
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275-Insertion-6
NF5275-Insertion-6
[»] chr4 (1 HSPs)
chr4 (8-339)||(8518513-8518844)


Alignment Details
Target: chr4 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 8 - 339
Target Start/End: Complemental strand, 8518844 - 8518513
Alignment:
Q  8 caatccaacttcgaaaactctaatatagcattactcaactcagtataatccaaatcaaacccagtaacaccacatggaaaaacaagcataacacaatcag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8518844 caatccaacttcgaaaactctaatatagcattactcaactcagtataatccaaatcaaacccagtaacaccacttggaaaaacaagcataacacaatcag 8518745  T
Q  108 gatgttcaaactcaatctcaggaatcttacctttaacagccctcgttggtgtttcaaattcaggaaaaacatcaagtcccataagaaacttcaactcttc 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8518744 gatgttcaaactcaatctcaggaatcttacctttaacagccctcgtcggtgtttcaaattcaggaaaaacatcaagtcccataagaaacttcaactcttc 8518645  T
Q  208 acaccctaatgaatccaaaagctccacatcccaaccaagactagcagcagccattgaaacagcaccaatagcatgaccaacatcatgattacaataccga 307  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8518644 acaccctaatgaatccaaaagcttcacatcccaaccaagactagcagcagccattgaaatagcaccaatagcatgaccaacatcatgattacaataccga 8518545  T
Q  308 aaaccacgttcgccatacctccaactttcacg 339  Q
    ||||||||||| |||||| |||||||||||||    
T  8518544 aaaccacgttcaccatacttccaactttcacg 8518513  T

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