View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_11 (Length: 347)
Name: NF5275_high_11
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 316
Target Start/End: Original strand, 46945582 - 46945899
Alignment:
| Q |
18 |
acaacaagaaaatattcctatgtcagttgcaaattagtagcttatgcaagtatataccgacaaaattaaagcataaatatatgagtacgtctattatgca |
117 |
Q |
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| T |
46945582 |
acaacaagaaaatattcctatgtcagttgcaaattagtagcttatgcaagtatataccgacaaaattaaagcataaatatatgagtacgtctattatgca |
46945681 |
T |
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| Q |
118 |
caagcaatataaatttggaacattaataatcacattataaatttaattttatggtgatannnnnnnatctgatgatataaactatagtttagtttatgtg |
217 |
Q |
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| T |
46945682 |
caagcaatataaatttggaacactaataatcacattataaatttaatttaatggtgatatttttttatctgatgatataaactatagtttagtttatgtg |
46945781 |
T |
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| Q |
218 |
tgatgcaagatttttctcaatcatactata-------------------ctatcaaatatcaataccattaaagtagtaaacaaaagcatgttactccat |
298 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46945782 |
tgatgcaagatttttctcaatcatactatacatacactatagaatctatctatcaaatatcaataccattaaagtagtaaacaaaagcatgttactccat |
46945881 |
T |
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| Q |
299 |
gcaagattattgttggaa |
316 |
Q |
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|||||||||||||||||| |
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| T |
46945882 |
gcaagattattgttggaa |
46945899 |
T |
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