View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_19 (Length: 285)
Name: NF5275_high_19
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_19 |
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| [»] scaffold0096 (1 HSPs) |
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| [»] scaffold0246 (1 HSPs) |
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Alignment Details
Target: scaffold0096 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 29209 - 28951
Alignment:
| Q |
18 |
ggaagaaagtaaacaacatcaagggcgttaggaatgatggtgttcctcaaagaacctggagaaaggtgttgcaatagcatacgcttaggaggactgtatc |
117 |
Q |
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| T |
29209 |
ggaagaaagtaaacaacatcaagggcgttaggaatgatggtgttcctcaaagaacctggagaaaggtgttgcaatagcatacgcttaggaggactgtatc |
29110 |
T |
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| Q |
118 |
taggatagataaattcttcttctttccaagtaacgccgcgaaagagaaagaggaagcgatttgcatatatgagagtgatccaagagcatcctaggatatt |
217 |
Q |
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| T |
29109 |
taggatagataaattcttcttctttccaagtaacgccgcgaaagagaaagaggaagcgatttgcatatatgagagtgatccaagagcatcctaggatatt |
29010 |
T |
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| Q |
218 |
ataataatccttcattgaagcccatcattcagtaaaataataaacccttccattcttct |
276 |
Q |
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| T |
29009 |
ataataatccttcattaaagcccatcattcagtaaaataataaacccttccattcttct |
28951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 12537373 - 12537631
Alignment:
| Q |
18 |
ggaagaaagtaaacaacatcaagggcgttaggaatgatggtgttcctcaaagaacctggagaaaggtgttgcaatagcatacgcttaggaggactgtatc |
117 |
Q |
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| T |
12537373 |
ggaagaaagtaaacaacatcaggggcgttaggaatgatggtgttcctcaaagaacctagagaaaggtgttgcaatagcatacgcttagtaggactgtatc |
12537472 |
T |
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| Q |
118 |
taggatagataaattcttcttctttccaagtaacgccgcgaaagagaaagaggaagcgatttgcatatatgagagtgatccaagagcatcctaggatatt |
217 |
Q |
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| T |
12537473 |
taggatagataaattcttcttctttcctagtaacgccgcgaaagagaaagaggaagcgatttgcatatatgagagtgatccaagagcatcctaggatatt |
12537572 |
T |
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| Q |
218 |
ataataatccttcattgaagcccatcattcagtaaaataataaacccttccattcttct |
276 |
Q |
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| T |
12537573 |
ataataatccttcattgaagcccatccatcagtaaaataataaacccttccattcttct |
12537631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0246 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 13382 - 13231
Alignment:
| Q |
105 |
ggaggactgtatctaggatagataaattcttcttctttccaagtaacgccgcgaaagagaaagaggaagcgatttgcatatatgagagtgatccaagagc |
204 |
Q |
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||||||||| | |||||||||| ||||| |||||||| |||||| || ||||||||||| ||| ||||||||||||||| | ||| ||||| |||| |
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| T |
13382 |
ggaggactgaacctaggatagaggaattccctttctttcctagtaactccacgaaagagaaataggttgcgatttgcatatatcacagtcatccatgagc |
13283 |
T |
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| Q |
205 |
atcctaggatattataataatccttcattgaagcccatcattcagtaaaata |
256 |
Q |
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| T |
13282 |
aagcagtgatgatataaaaatccttcattgtagcccatccatcagtgaaata |
13231 |
T |
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