View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_22 (Length: 272)
Name: NF5275_high_22
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 21019782 - 21019524
Alignment:
| Q |
1 |
atttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggaca |
100 |
Q |
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| T |
21019782 |
atttcaaaagttccagtttcaaactaataaaaccgcgactatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggaca |
21019683 |
T |
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| Q |
101 |
atgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaa |
200 |
Q |
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| T |
21019682 |
atgcggaagaatattgcagtgggatctgccagggggattgcttacttgcattatagttatgaccctcctaagattattcaccgtgatgtgaaagctgcaa |
21019583 |
T |
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| Q |
201 |
acatatattttttataatagcaaatattattaatgcatccaaaactctcaagaagagaa |
259 |
Q |
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| T |
21019582 |
acatattttttttttaatagcaaatattattaatgcatccaaaactctcaagaagagaa |
21019524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 1435775 - 1435974
Alignment:
| Q |
1 |
atttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggaca |
100 |
Q |
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| T |
1435775 |
atttcaaaagttccagtttcaaactaa---aaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctcaacctccgcttgagtggcca |
1435871 |
T |
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| Q |
101 |
atgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaa |
200 |
Q |
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| T |
1435872 |
atgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgac---cctaagattattcaccgtgatgtgaaagctgcaa |
1435968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 1448632 - 1448797
Alignment:
| Q |
38 |
tctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccaggggga |
137 |
Q |
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| T |
1448632 |
tctatgtatattgattgtgtttttgtagaacgtaatgactctcaaccgccgcttgactggccaatgcggaagaatattgcgctaggagctgccagggggc |
1448731 |
T |
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| Q |
138 |
ttgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaaacatat |
206 |
Q |
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| T |
1448732 |
ttgcttacttgcatgatcattgtgac---cctaagattattcatcgtgatgtgaaagctgcaaatatat |
1448797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 1441253 - 1441382
Alignment:
| Q |
63 |
tagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtga |
162 |
Q |
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| T |
1441253 |
tagaacgtaatgactctcagccgccgcttgagtggccaatgcggaagaatattgcgctgggagctgccagggggcttgcttacttgcatgatcattgtga |
1441352 |
T |
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| Q |
163 |
ccctcctaagattattcaccgtgatgtgaaagc |
195 |
Q |
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| T |
1441353 |
c---cctaagattattcatcgtgatgtgaaagc |
1441382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 46 - 206
Target Start/End: Original strand, 1429207 - 1429364
Alignment:
| Q |
46 |
tattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttac |
145 |
Q |
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|||||||| || ||||||||||||||| || | | || |||||||| ||| |||||| ||||||||||||||||||||||||||| ||| |||||||| |
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| T |
1429207 |
tattgattttgatgttgtagaacgtaacgaggttgatccgccgcttgagtggccaatgcggaagaatattgcactgggatctgccagagggcttgcttac |
1429306 |
T |
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| Q |
146 |
ttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaaacatat |
206 |
Q |
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| T |
1429307 |
ttgcatgatcactgtgac---cctaagattattcatcgtgatgtgaaagctgcaaatatat |
1429364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 1455388 - 1455542
Alignment:
| Q |
38 |
tctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccaggggga |
137 |
Q |
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|||||||||||| || |||||||||||||||||||| ||||||||| || ||||| ||| ||||| ||||||||||| |||||| |||||| |||| |
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| T |
1455388 |
tctatgtatattctttttgttgttgtagaacgtaatgcctctcaaccgccacttgattggccaatgaggaagaatattgggctgggagctgccaaggggc |
1455487 |
T |
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| Q |
138 |
ttgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagc |
195 |
Q |
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| T |
1455488 |
tggcttacttgcatgatcattgtga---tcctaaggttattcatcgtgatgtgaaagc |
1455542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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