View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_25 (Length: 262)
Name: NF5275_high_25
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 6 - 247
Target Start/End: Complemental strand, 29008942 - 29008701
Alignment:
| Q |
6 |
agcagcacagacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatgaacaaccttccctgca |
105 |
Q |
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| T |
29008942 |
agcatcacaaacacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatgaacaaccttccctgca |
29008843 |
T |
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| Q |
106 |
tacagaatcctaagtttagcacaaattcttataacacaatccaaagtgaactcgttaggcaacaccaaggtactgcttataaccaattatatcgtaccat |
205 |
Q |
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| T |
29008842 |
tacagaatcctaagtctagcacaaattcttataacacaatccaaagtgaactcattaggcaacaccaagttactgcttataaccaattgtatcgtaccat |
29008743 |
T |
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| Q |
206 |
gttataagagtttaacttgaacaaaaggttgtatgtgtatgt |
247 |
Q |
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| T |
29008742 |
gttataagagtttaacttgaacaaaatgttgtatgtgtatgt |
29008701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 241
Target Start/End: Complemental strand, 29010573 - 29010534
Alignment:
| Q |
202 |
ccatgttataagagtttaacttgaacaaaaggttgtatgt |
241 |
Q |
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| T |
29010573 |
ccatgttacaagagtttaacttgaacaaaatgttgtatgt |
29010534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 171
Target Start/End: Original strand, 34146464 - 34146619
Alignment:
| Q |
16 |
acacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgtaaagtccatgaacaaccttccctgcatacagaatcc |
115 |
Q |
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| T |
34146464 |
acacaataaaactcagcaagtgcactactaactgagttatcaaaatcaaaaccatccttaatgcaaagtccatgaacaaccttcccaacatacagaatcc |
34146563 |
T |
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| Q |
116 |
taagtttagcacaaattcttataacacaatccaaagtgaactcgttaggcaacacc |
171 |
Q |
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||||| ||||||||| || | ||||||||||||||||||||| |||||||||||| |
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| T |
34146564 |
taagtctagcacaaaccctcaaaacacaatccaaagtgaactcattaggcaacacc |
34146619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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