View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_high_27 (Length: 251)

Name: NF5275_high_27
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_high_27
NF5275_high_27
[»] chr5 (3 HSPs)
chr5 (131-220)||(29770517-29770606)
chr5 (1-71)||(29770390-29770460)
chr5 (204-240)||(29770624-29770660)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 29770517 - 29770606
Alignment:
Q  131 aacacccattaccctctaatttatatgatttcatctttgtctttattacaatttatcgtaggattaactaacataagcctgagattaatt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29770517 aacacccattaccctctaatttatatgatttcatctttgtctttattacaatttatcgtaggattaactaacataagcctgagattaatt 29770606  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29770390 - 29770460
Alignment:
Q  1 attgaaggacaagaggctattctatgagtggcgtgttggtcttgttgattgtttgtgtaggagtagcattc 71  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29770390 attgaaggacaagaggctattctatgagtggtgtgttggtcttgttgattgtttgtgtaggagtagcattc 29770460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 29770624 - 29770660
Alignment:
Q  204 taagcctgagattaattgtatcctctcctctacctat 240  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29770624 taagcctgagattaattgtatcctctcttctacctat 29770660  T

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