View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_28 (Length: 247)
Name: NF5275_high_28
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_28 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 1160016 - 1160248
Alignment:
| Q |
12 |
ataggcctaaacagaagcaactaaacatgatacttaattagctgtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttggg |
111 |
Q |
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| T |
1160016 |
ataggcctaaacagaagcaactaaacatgatacttaattag---tggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttggg |
1160112 |
T |
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| Q |
112 |
acacaaacatgcaggtgattgtgttcataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgcaccgccga |
211 |
Q |
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| T |
1160113 |
acacaaacatgaaggtgtttgtgtccataattgtgcccgtgattggcgactgcaccaccaaccactccaccagcaactccaccagccactgcaccgccga |
1160212 |
T |
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| Q |
212 |
tacttcctgcagctgctccacctgaccttcctctac |
247 |
Q |
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| T |
1160213 |
taattcctgcagctgctccacctgaccttcctctac |
1160248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 1141671 - 1141737
Alignment:
| Q |
55 |
gtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaacat |
121 |
Q |
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| T |
1141671 |
gtggaagtgaaacaatatgattataaccaaaagctcaaacataaaataaatgttgagacacaaacat |
1141737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 1137017 - 1137083
Alignment:
| Q |
55 |
gtggaagtaaaacaacatgattaaagcaaaaaactcaaacataaaataaatgttgggacacaaacat |
121 |
Q |
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| T |
1137017 |
gtggaagtgaaacaatgtaattaaagccaaaagctcaaacataaaagaaatgttgagacacaaacat |
1137083 |
T |
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