View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5275_high_3 (Length: 492)
Name: NF5275_high_3
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 262
Target Start/End: Complemental strand, 37221061 - 37220809
Alignment:
| Q |
10 |
aatatgaacacagataagaatttgggtgtcttgaatatgtaaattggtgttagcaattatgcatgctatatggaaaatggaaataggattttgagaaaga |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37221061 |
aatatgaacacagataagaatttgggtgtcttgaatatgtaaactggtgttagcaattatgcatgctatatggaaaatggaaataggattttgagaaaga |
37220962 |
T |
|
| Q |
110 |
catctaaatcttccagttgtgagatatgaacattccaattataactcttaataatattaatattaaaattcatacaaaccaatcaactattannnnnnng |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37220961 |
catctaaatcttccagttgtgagatatgaacattccaattataactcttattaatattaatattaaaattcatacaaaccaatcaactattatttttttg |
37220862 |
T |
|
| Q |
210 |
tttaagtcaaatgtaaggacctgtgagtgtaccatgataatatattgagattt |
262 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37220861 |
tttaagtcaaatgtaaggacctgtgagtgtaccatgataatatattgagattt |
37220809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 248 - 474
Target Start/End: Complemental strand, 37220623 - 37220397
Alignment:
| Q |
248 |
aatatattgagattttgaacaaaataaataaataacccgtaggaggatttgacagagtcttagtttttgttgtgattgacatataatatatgttgagttt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
37220623 |
aatatattgagattttgaacaaaataaataaataacccgtaggaggatttgacagagtcttagttattgttgtcattgaaatataatatatgttgagttt |
37220524 |
T |
|
| Q |
348 |
tttaaaagatttttggatttcataatgtttgnnnnnnnttattatatgcatggaaagcagatttcctgctgtaactgcagggtctgtaaccacagcgtgc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
37220523 |
tttaaaagatttttggatttcataatgtttgaaaaaaattattatatgcatggaaagcagatttcctgctgtaactgcagggtctgtaaccacagggtgc |
37220424 |
T |
|
| Q |
448 |
tgtaaagtatatgagctttctgataag |
474 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
37220423 |
tgtaaagtatatgagctttctgataag |
37220397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University