View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_33 (Length: 239)
Name: NF5275_high_33
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 67 - 212
Target Start/End: Original strand, 1160824 - 1160969
Alignment:
| Q |
67 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagacctataattattggaacaaa |
166 |
Q |
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| T |
1160824 |
aatgatgatatttatgtatatatgtgaagatttcttgcaaatcattttgtacaaatatatatctttatttgtttgttagatctataattattggaacaaa |
1160923 |
T |
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| Q |
167 |
cttaattacgatataaacatgtatagatcaaaccattaatatatat |
212 |
Q |
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| T |
1160924 |
cttaattaccatataaacatgtatagatcaaatcattaatatatat |
1160969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 1160714 - 1160755
Alignment:
| Q |
18 |
tgaaagtaatttaatgtggtcccaaaaaatggtaatagaaag |
59 |
Q |
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| T |
1160714 |
tgaaagtaattcaatgtggtcccaaaaaatggtaatagaaag |
1160755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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