View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_39 (Length: 220)
Name: NF5275_high_39
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_39 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 117 - 220
Target Start/End: Original strand, 47980962 - 47981065
Alignment:
| Q |
117 |
agttcttaagtattcacaaagtgttataatcattctatctctttgaccaagttataataattttccacacgttcctgaacctcttccacatgcacctctt |
216 |
Q |
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| T |
47980962 |
agttcttaagtattcacaaagtgttataatcattctatctctttgaccaagttataataattttccacacgttcctgaacctcttccacatgcacctctt |
47981061 |
T |
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| Q |
217 |
ttgt |
220 |
Q |
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|||| |
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| T |
47981062 |
ttgt |
47981065 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 47980846 - 47980884
Alignment:
| Q |
1 |
aaacctataagaccgaaacactataattgttggtgttat |
39 |
Q |
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|||||| |||||||||| ||||||||||||||||||||| |
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| T |
47980846 |
aaacctttaagaccgaagcactataattgttggtgttat |
47980884 |
T |
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