View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_high_8 (Length: 425)
Name: NF5275_high_8
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 4349933 - 4349630
Alignment:
| Q |
19 |
cacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaatttgtatttaggggtgttgctacagctgaactcatactcccttttggtaga |
118 |
Q |
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| T |
4349933 |
cacacgtgaagaagtggttgttgcggtggcgtttgttgttaaatgaaaatttgtatttaggggtgttgctacagctgaactcatactcccttgtggtaga |
4349834 |
T |
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| Q |
119 |
gaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtggtgatgaaacatgaggttggtaatggcttttccggcgagcttgccgcggcgttta |
218 |
Q |
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| T |
4349833 |
gaggcgtgtgtcgttacgacggcttgaggtggagccaccgtggtggtgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggtgttta |
4349734 |
T |
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| Q |
219 |
accatcatgttgaggtccatcgttagttttcccttggatatgccttttcttaacatgaacaaagccacacggatcatactccatactctcttggttatta |
318 |
Q |
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| T |
4349733 |
accatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagccacacgtatcatactccatactctcttggttatta |
4349634 |
T |
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| Q |
319 |
ttgg |
322 |
Q |
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|||| |
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| T |
4349633 |
ttgg |
4349630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 65 - 322
Target Start/End: Original strand, 4358997 - 4359254
Alignment:
| Q |
65 |
aaatttgtatttaggggtgttgctacagctgaactcatactcccttttggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtgg |
164 |
Q |
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| T |
4358997 |
aaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtgg |
4359096 |
T |
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| Q |
165 |
tgatgaaacatgaggttggtaatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcgttagttttcccttggatatgcctt |
264 |
Q |
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| T |
4359097 |
tgatgaaacatgaggttggtgatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgcctt |
4359196 |
T |
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| Q |
265 |
ttcttaacatgaacaaagccacacggatcatactccatactctcttggttattattgg |
322 |
Q |
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| T |
4359197 |
ttcttaacatgaacaaggccacacgtatcatactccatactctcttagtaattattgg |
4359254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 65 - 322
Target Start/End: Complemental strand, 4353273 - 4353017
Alignment:
| Q |
65 |
aaatttgtatttaggggtgttgctacagctgaactcatactcccttttggtagagaggcgtgtgtcgttacggcggcttgaggtggagccaccatggtgg |
164 |
Q |
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| T |
4353273 |
aaatttgtagttgggtgtgttgctgcagctgaactcatactcccttgtggtagagaggcgtgtgtcattacggcggcttgaggtggagccaccatggtgg |
4353174 |
T |
|
| Q |
165 |
tgatgaaacatgaggttggtaatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcgttagttttcccttggatatgcctt |
264 |
Q |
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| T |
4353173 |
tgatgaaacatgaggttggtgatggcttttccggcaagctt-ctacggcgtttgaccatcatgttgaggtccatcattagttttccctttgatatacctt |
4353075 |
T |
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| Q |
265 |
ttcttaacatgaacaaagccacacggatcatactccatactctcttggttattattgg |
322 |
Q |
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| T |
4353074 |
ttcttaacatgaacaaagccacacgtatcatactccatactctcttggttattattgg |
4353017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 4349569 - 4349533
Alignment:
| Q |
383 |
aagaacaaaaagagagagctagagagattttcttgga |
419 |
Q |
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| T |
4349569 |
aagaacagaaagagagagctagagagatttttttgga |
4349533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 135 - 310
Target Start/End: Original strand, 43475430 - 43475611
Alignment:
| Q |
135 |
cggcggcttgaggtggagccaccatggtggtgatga------aacatgaggttggtaatggcttttccggcgagcttgccgcggcgtttaaccatcatgt |
228 |
Q |
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||||||||||||||||||||||| |||| ||| ||| ||||| || |||| ||||||||||||||||||||||| ||||||||| | |||||||| |
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| T |
43475430 |
cggcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagcatcatgt |
43475529 |
T |
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| Q |
229 |
tgaggtccatcgttagttttcccttggatatgccttttcttaacatgaacaaagccacacggatcatactccatactctctt |
310 |
Q |
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| T |
43475530 |
ttaggcccatcattagtttgccctttgacataccttttctcaacatgaagaaggccacacgtaccatactccacactttctt |
43475611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 171 - 310
Target Start/End: Original strand, 43486091 - 43486230
Alignment:
| Q |
171 |
aacatgaggttggtaatggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcgttagttttcccttggatatgccttttctta |
270 |
Q |
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||||| || |||| ||||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||| | ||||||||||| || ||||||||||| | |
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| T |
43486091 |
aacattagattggcaatggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctca |
43486190 |
T |
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| Q |
271 |
acatgaacaaagccacacggatcatactccatactctctt |
310 |
Q |
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||||||| || || ||||| | ||||||||| |||||||| |
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| T |
43486191 |
acatgaagaaggctacacgtaccatactccacactctctt |
43486230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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