View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_11 (Length: 372)
Name: NF5275_low_11
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 129 - 357
Target Start/End: Original strand, 49202266 - 49202497
Alignment:
| Q |
129 |
agtatgattcaagtaacacaagttactggcttatgtttattttttggatgtactagttacgatgcaagctcaacgcacggcaccgcctgatatgcattgc |
228 |
Q |
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| T |
49202266 |
agtatgattcaagtaacacaagttattggcttatgtttattttttggatgtactagttacgatgcaagctcaacgcacggcaccccctgatatgcattgc |
49202365 |
T |
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| Q |
229 |
aaagacaagtttcttattataagcactgttgtcccctttggaactacagaagatgacattacatctgatatggtgagatcatg---ttatttatatattt |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
49202366 |
aaagacaagtttcttattataagcactgttgtcccctttggaactacagaagatgacattacatctgatatggtgagatcatgttattatttatatattt |
49202465 |
T |
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| Q |
326 |
ttctctgttttgagggtgtgatatgtcgtaag |
357 |
Q |
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| T |
49202466 |
ttctctgttttgagggtgtgatatgtcgtaag |
49202497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 49202150 - 49202231
Alignment:
| Q |
11 |
catcatcaagccaaaggataaatgtgatttcactggtannnnnnncatttaccttcttgtttaaggctcaattcatttcata |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49202150 |
catcatcaagccaaaggataaatgtgatttcactggtatttttttcatttaccttcttgtttaaggctcaattcatttcata |
49202231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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