View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_15 (Length: 316)
Name: NF5275_low_15
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 295
Target Start/End: Original strand, 12614347 - 12614631
Alignment:
| Q |
11 |
caaaggactaaaccatgaaaaacaccaaattacaaggatgtaaaacataatttaccctaaagaaaaataataacatgagtagtgtttcannnnnnnnaat |
110 |
Q |
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| T |
12614347 |
caaaggactaaaccatgaaaaacatcaaattacaaggatgtaaatcataatttaccctaaagaaaaataataacatgagtagtgtttcattttttttaat |
12614446 |
T |
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| Q |
111 |
aatttaaaagtttaaatgaattaagtattgaaagttcatcgaagttaaagcatatctcatagtccagaatgcatcgataaatgtacctacatagtactga |
210 |
Q |
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| T |
12614447 |
aatttaaaagtttaaatgaattaagaattgaaagctcatcgaagttaaagcatatctcacagtccagaatgcaccgacaaatgtacttacatagtactga |
12614546 |
T |
|
| Q |
211 |
gtactgacctaacaaagtcattatatttgtaatagaaattgaatttacgtttttaccgaatatgagtcaactctttaccgattag |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
12614547 |
gtactgacctaacaaagtcattatatttgtaatagaaattgaatttacgtttttactaagtatgagtcaactctttaccgattag |
12614631 |
T |
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