View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_low_16 (Length: 316)

Name: NF5275_low_16
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_low_16
NF5275_low_16
[»] chr2 (8 HSPs)
chr2 (7-200)||(21019828-21020025)
chr2 (7-200)||(1435538-1435729)
chr2 (242-300)||(21020901-21020959)
chr2 (128-200)||(1428924-1428996)
chr2 (217-247)||(9058580-9058610)
chr2 (217-247)||(13438443-13438473)
chr2 (217-247)||(17473120-17473150)
chr2 (217-247)||(19930790-19930820)
[»] scaffold0321 (1 HSPs)
scaffold0321 (217-247)||(10079-10109)
[»] chr8 (9 HSPs)
chr8 (217-247)||(1179910-1179940)
chr8 (217-247)||(9122285-9122315)
chr8 (217-247)||(12831147-12831177)
chr8 (217-247)||(14548022-14548052)
chr8 (217-247)||(34012266-34012296)
chr8 (218-247)||(42710265-42710294)
chr8 (218-247)||(43414552-43414581)
chr8 (219-247)||(10621059-10621087)
chr8 (219-247)||(40423915-40423943)
[»] chr7 (7 HSPs)
chr7 (217-247)||(3784095-3784125)
chr7 (217-247)||(19329942-19329972)
chr7 (217-247)||(35137633-35137663)
chr7 (217-247)||(38267140-38267170)
chr7 (217-247)||(38837317-38837347)
chr7 (218-247)||(31735977-31736006)
chr7 (219-247)||(32951465-32951493)
[»] chr6 (7 HSPs)
chr6 (217-247)||(946476-946506)
chr6 (217-247)||(6209435-6209465)
chr6 (217-247)||(11427718-11427748)
chr6 (217-247)||(17598654-17598684)
chr6 (217-247)||(32869778-32869808)
chr6 (218-247)||(31976348-31976377)
chr6 (219-247)||(22880630-22880658)
[»] chr5 (5 HSPs)
chr5 (217-247)||(33149608-33149638)
chr5 (217-247)||(36732912-36732942)
chr5 (217-247)||(40145507-40145537)
chr5 (218-247)||(6679798-6679827)
chr5 (218-247)||(15409581-15409610)
[»] chr4 (7 HSPs)
chr4 (217-247)||(480417-480447)
chr4 (217-247)||(6034144-6034174)
chr4 (217-247)||(29234215-29234245)
chr4 (217-247)||(41236447-41236477)
chr4 (217-247)||(42044337-42044367)
chr4 (219-248)||(54473505-54473534)
chr4 (219-247)||(40574879-40574907)
[»] chr3 (4 HSPs)
chr3 (217-247)||(33644300-33644330)
chr3 (217-247)||(36707398-36707428)
chr3 (217-247)||(53982111-53982141)
chr3 (218-247)||(11347893-11347922)
[»] chr1 (8 HSPs)
chr1 (217-247)||(9474846-9474876)
chr1 (217-247)||(27564705-27564735)
chr1 (217-247)||(38632291-38632321)
chr1 (217-247)||(41758905-41758935)
chr1 (217-247)||(50630558-50630588)
chr1 (218-247)||(32813347-32813376)
chr1 (217-246)||(37649299-37649328)
chr1 (218-247)||(49811498-49811527)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 21019828 - 21020025
Alignment:
Q  7 aagaatttccatgtctgtgtttacatagcttccagctaatatcaaggaaatacaacttgtggttttttagtaataaatcaaaaacaaattttccgttgaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||    
T  21019828 aagaatttccatgtctgtgtttacatagcttccagctaatatcaaggaaatacaaattgttgttttttagtaataaatcaaaaacaaatttgcggttgaa 21019927  T
Q  107 aactaacacttaaaacgttgatgccagacaaggatatatgagagaaaag----acaggacacctcgtaaacacattgctacacttccattagccatgt 200  Q
    |||||||||||||||||||||||||||| ||||||| ||||| ||||||    | |||||||||||||||||||||||||||||||||||||||||||    
T  21019928 aactaacacttaaaacgttgatgccagaaaaggatacatgagtgaaaagatatataggacacctcgtaaacacattgctacacttccattagccatgt 21020025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 7 - 200
Target Start/End: Complemental strand, 1435729 - 1435538
Alignment:
Q  7 aagaatttccatgtctgtgtttacatagcttccagctaatatcaaggaaatacaacttgtggtttttt-agtaataaatcaaaaacaaattttccgttga 105  Q
    |||| ||||||||| ||||||||||||||||||||||||||||||||||||| || |||| ||||||| | |||||||||  ||||||||||   |||||    
T  1435729 aagactttccatgtttgtgtttacatagcttccagctaatatcaaggaaatataaattgttgtttttttactaataaatcggaaacaaatttgatgttga 1435630  T
Q  106 aaactaacacttaaaacgttgatgccagacaaggatatatgagagaaaagacaggacacctcgtaaacacattgctacacttccattagccatgt 200  Q
    |  |||||||||||||| || ||| |||| ||||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||||||    
T  1435629 acgctaacacttaaaacattaatgtcagaaaaggatatatgagagaaaagataggacacctcgtaaacac---gatacacttccattagccatgt 1435538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 242 - 300
Target Start/End: Original strand, 21020901 - 21020959
Alignment:
Q  242 aaaagatctatccaaatgtattaaaaatagccaatagacaatcgttcacagatacaatc 300  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21020901 aaaaaatctatccaaatgtattaaaagtagccaatagacaatcgttcacagatacaatc 21020959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 1428996 - 1428924
Alignment:
Q  128 tgccagacaaggatatatgagagaaaagacaggacacctcgtaaacacattgctacacttccattagccatgt 200  Q
    ||||||| ||| ||||||||||||||| |  || |||||||||||||   ||||||||||||||| |||||||    
T  1428996 tgccagaaaagaatatatgagagaaaacatggggcacctcgtaaacatgatgctacacttccattggccatgt 1428924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 9058610 - 9058580
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  9058610 gcattaggaagagagaagaggagagaaaaga 9058580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 13438473 - 13438443
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  13438473 gcattaggaagagagaagaggagagaaaaga 13438443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 17473150 - 17473120
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  17473150 gcattaggaagagagaagaggagagaaaaga 17473120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 19930790 - 19930820
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  19930790 gcattaggaagagagaagaggagagaaaaga 19930820  T

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Target: scaffold0321 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 10079 - 10109
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  10079 gcattaggaagagagaagaggagagaaaaga 10109  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 1179910 - 1179940
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  1179910 gcattaggaagagagaagaggagagaaaaga 1179940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 9122315 - 9122285
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  9122315 gcattaggaagagagaagaggagagaaaaga 9122285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 12831177 - 12831147
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  12831177 gcattaggaagagagaagaggagagaaaaga 12831147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 14548052 - 14548022
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  14548052 gcattaggaagagagaagaggagagaaaaga 14548022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 34012266 - 34012296
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  34012266 gcattaggaagagagaagaggagagaaaaga 34012296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 42710265 - 42710294
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  42710265 cattaggaagagagaagaggagagaaaaga 42710294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 43414552 - 43414581
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  43414552 cattaggaagagagaagaggagagaaaaga 43414581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 10621059 - 10621087
Alignment:
Q  219 attaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||    
T  10621059 attaggaagagagaagaggagagaaaaga 10621087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 40423915 - 40423943
Alignment:
Q  219 attaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||    
T  40423915 attaggaagagagaagaggagagaaaaga 40423943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 3784125 - 3784095
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  3784125 gcattaggaagagagaagaggagagaaaaga 3784095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 19329972 - 19329942
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  19329972 gcattaggaagagagaagaggagagaaaaga 19329942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 35137663 - 35137633
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  35137663 gcattaggaagagagaagaggagagaaaaga 35137633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 38267170 - 38267140
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  38267170 gcattaggaagagagaagaggagagaaaaga 38267140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 38837347 - 38837317
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  38837347 gcattaggaagagagaagaggagagaaaaga 38837317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 31736006 - 31735977
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  31736006 cattaggaagagagaagaggagagaaaaga 31735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 32951465 - 32951493
Alignment:
Q  219 attaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||    
T  32951465 attaggaagagagaagaggagagaaaaga 32951493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 946506 - 946476
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  946506 gcattaggaagagagaagaggagagaaaaga 946476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 6209435 - 6209465
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  6209435 gcattaggaagagagaagaggagagaaaaga 6209465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 11427748 - 11427718
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  11427748 gcattaggaagagagaagaggagagaaaaga 11427718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 17598684 - 17598654
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  17598684 gcattaggaagagagaagaggagagaaaaga 17598654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 32869808 - 32869778
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  32869808 gcattaggaagagagaagaggagagaaaaga 32869778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 31976377 - 31976348
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  31976377 cattaggaagagagaagaggagagaaaaga 31976348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Original strand, 22880630 - 22880658
Alignment:
Q  219 attaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||    
T  22880630 attaggaagagagaagaggagagaaaaga 22880658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 33149608 - 33149638
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  33149608 gcattaggaagagagaagaggagagaaaaga 33149638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 36732912 - 36732942
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  36732912 gcattaggaagagagaagaggagagaaaaga 36732942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 40145537 - 40145507
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  40145537 gcattaggaagagagaagaggagagaaaaga 40145507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 6679827 - 6679798
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  6679827 cattaggaagagagaagaggagagaaaaga 6679798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 15409581 - 15409610
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  15409581 cattaggaagagagaagaggagagaaaaga 15409610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 480417 - 480447
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  480417 gcattaggaagagagaagaggagagaaaaga 480447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 6034174 - 6034144
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  6034174 gcattaggaagagagaagaggagagaaaaga 6034144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 29234215 - 29234245
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  29234215 gcattaggaagagagaagaggagagaaaaga 29234245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 41236477 - 41236447
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  41236477 gcattaggaagagagaagaggagagaaaaga 41236447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 42044337 - 42044367
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  42044337 gcattaggaagagagaagaggagagaaaaga 42044367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 248
Target Start/End: Original strand, 54473505 - 54473534
Alignment:
Q  219 attaggaagagagaagaggagagaaaagat 248  Q
    ||||||||||||||||||||||||||||||    
T  54473505 attaggaagagagaagaggagagaaaagat 54473534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 247
Target Start/End: Complemental strand, 40574907 - 40574879
Alignment:
Q  219 attaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||    
T  40574907 attaggaagagagaagaggagagaaaaga 40574879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 33644330 - 33644300
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  33644330 gcattaggaagagagaagaggagagaaaaga 33644300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 36707398 - 36707428
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  36707398 gcattaggaagagagaagaggagagaaaaga 36707428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 53982141 - 53982111
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  53982141 gcattaggaagagagaagaggagagaaaaga 53982111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 11347893 - 11347922
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  11347893 cattaggaagagagaagaggagagaaaaga 11347922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 9474846 - 9474876
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  9474846 gcattaggaagagagaagaggagagaaaaga 9474876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 27564705 - 27564735
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  27564705 gcattaggaagagagaagaggagagaaaaga 27564735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Original strand, 38632291 - 38632321
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  38632291 gcattaggaagagagaagaggagagaaaaga 38632321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 41758935 - 41758905
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  41758935 gcattaggaagagagaagaggagagaaaaga 41758905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 247
Target Start/End: Complemental strand, 50630588 - 50630558
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaaga 247  Q
    |||||||||||||||||||||||||||||||    
T  50630588 gcattaggaagagagaagaggagagaaaaga 50630558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Complemental strand, 32813376 - 32813347
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  32813376 cattaggaagagagaagaggagagaaaaga 32813347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 246
Target Start/End: Complemental strand, 37649328 - 37649299
Alignment:
Q  217 gcattaggaagagagaagaggagagaaaag 246  Q
    ||||||||||||||||||||||||||||||    
T  37649328 gcattaggaagagagaagaggagagaaaag 37649299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 247
Target Start/End: Original strand, 49811498 - 49811527
Alignment:
Q  218 cattaggaagagagaagaggagagaaaaga 247  Q
    ||||||||||||||||||||||||||||||    
T  49811498 cattaggaagagagaagaggagagaaaaga 49811527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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