View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_low_17 (Length: 316)

Name: NF5275_low_17
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_low_17
NF5275_low_17
[»] chr1 (16 HSPs)
chr1 (79-311)||(51758668-51758879)
chr1 (170-288)||(16222763-16222881)
chr1 (185-313)||(28636903-28637031)
chr1 (184-309)||(12189951-12190076)
chr1 (162-289)||(13208588-13208716)
chr1 (162-273)||(15214304-15214415)
chr1 (185-267)||(5911682-5911764)
chr1 (185-302)||(897455-897571)
chr1 (164-254)||(37097371-37097461)
chr1 (169-266)||(15204574-15204675)
chr1 (185-307)||(18308148-18308270)
chr1 (162-311)||(1843930-1844078)
chr1 (185-279)||(17112925-17113019)
chr1 (205-266)||(3399642-3399703)
chr1 (169-239)||(15193903-15193973)
chr1 (195-310)||(39368614-39368730)
[»] chr8 (20 HSPs)
chr8 (163-311)||(19369884-19370032)
chr8 (164-311)||(5528722-5528869)
chr8 (164-311)||(19448427-19448574)
chr8 (164-311)||(19532502-19532649)
chr8 (164-309)||(18766896-18767041)
chr8 (164-309)||(25637623-25637768)
chr8 (163-305)||(28249055-28249197)
chr8 (162-311)||(45356086-45356235)
chr8 (164-311)||(17634445-17634592)
chr8 (164-310)||(25638786-25638932)
chr8 (177-308)||(6801807-6801938)
chr8 (182-281)||(29553626-29553725)
chr8 (182-302)||(6403590-6403710)
chr8 (186-312)||(5650918-5651044)
chr8 (186-309)||(29345432-29345556)
chr8 (182-266)||(31347346-31347430)
chr8 (182-310)||(31369081-31369209)
chr8 (230-309)||(6223446-6223525)
chr8 (185-308)||(14997621-14997744)
chr8 (182-281)||(19341425-19341524)
[»] chr6 (23 HSPs)
chr6 (164-309)||(14669322-14669467)
chr6 (172-311)||(12591820-12591959)
chr6 (164-311)||(17719697-17719844)
chr6 (163-312)||(6684072-6684220)
chr6 (164-311)||(11936741-11936888)
chr6 (164-311)||(16734784-16734931)
chr6 (164-311)||(15361694-15361841)
chr6 (197-311)||(11948721-11948835)
chr6 (169-268)||(15690422-15690521)
chr6 (194-310)||(23264471-23264587)
chr6 (164-309)||(10070636-10070778)
chr6 (187-301)||(29667899-29668015)
chr6 (182-311)||(9631128-9631258)
chr6 (183-281)||(27969921-27970019)
chr6 (185-290)||(4485560-4485665)
chr6 (169-309)||(34374809-34374951)
chr6 (185-311)||(23904327-23904452)
chr6 (182-311)||(1942566-1942695)
chr6 (181-281)||(2941001-2941102)
chr6 (198-284)||(30481229-30481315)
chr6 (182-226)||(4591147-4591191)
chr6 (182-226)||(6673677-6673721)
chr6 (206-266)||(10935800-10935860)
[»] chr5 (27 HSPs)
chr5 (162-311)||(17037520-17037669)
chr5 (164-309)||(23679420-23679565)
chr5 (164-309)||(23855246-23855391)
chr5 (164-311)||(5079038-5079185)
chr5 (164-305)||(7410803-7410944)
chr5 (164-277)||(31068971-31069083)
chr5 (185-309)||(19984995-19985119)
chr5 (186-309)||(12042152-12042276)
chr5 (182-281)||(9333565-9333664)
chr5 (182-281)||(9354393-9354492)
chr5 (185-301)||(30786267-30786383)
chr5 (214-310)||(37233061-37233157)
chr5 (182-245)||(18191889-18191952)
chr5 (164-223)||(31406413-31406472)
chr5 (200-307)||(40401987-40402094)
chr5 (182-245)||(11833281-11833344)
chr5 (216-310)||(42076078-42076172)
chr5 (197-264)||(10869450-10869516)
chr5 (177-226)||(28080092-28080141)
chr5 (185-310)||(31571029-31571158)
chr5 (177-226)||(11499950-11499999)
chr5 (177-226)||(11507337-11507386)
chr5 (177-226)||(11514709-11514758)
chr5 (177-226)||(11522110-11522159)
chr5 (177-226)||(11529523-11529572)
chr5 (182-226)||(12004569-12004612)
chr5 (185-225)||(17535371-17535411)
[»] scaffold0684 (1 HSPs)
scaffold0684 (164-312)||(720-868)
[»] chr4 (15 HSPs)
chr4 (163-311)||(1684926-1685074)
chr4 (164-310)||(47066009-47066155)
chr4 (162-311)||(1152021-1152170)
chr4 (162-311)||(43600244-43600393)
chr4 (164-310)||(53300330-53300476)
chr4 (182-310)||(24558970-24559098)
chr4 (186-300)||(4881054-4881168)
chr4 (186-300)||(4904125-4904239)
chr4 (201-310)||(21539247-21539355)
chr4 (186-312)||(37750963-37751088)
chr4 (194-263)||(48464049-48464118)
chr4 (253-311)||(27739749-27739807)
chr4 (255-310)||(48465443-48465498)
chr4 (182-260)||(26075222-26075300)
chr4 (186-226)||(4923692-4923732)
[»] chr3 (19 HSPs)
chr3 (169-311)||(13845976-13846118)
chr3 (173-309)||(1627923-1628059)
chr3 (164-310)||(7407729-7407875)
chr3 (164-305)||(2550145-2550286)
chr3 (164-311)||(1654555-1654702)
chr3 (194-311)||(2943188-2943305)
chr3 (189-302)||(16457314-16457427)
chr3 (186-307)||(26707860-26707981)
chr3 (197-309)||(36035301-36035413)
chr3 (182-309)||(9633418-9633545)
chr3 (182-281)||(1613217-1613316)
chr3 (182-288)||(5498475-5498581)
chr3 (199-311)||(35082990-35083102)
chr3 (182-256)||(27259474-27259548)
chr3 (182-309)||(27713415-27713539)
chr3 (186-311)||(2179926-2180053)
chr3 (253-309)||(28745043-28745099)
chr3 (256-309)||(36035535-36035588)
chr3 (232-309)||(26735681-26735758)
[»] chr2 (14 HSPs)
chr2 (164-310)||(30266982-30267128)
chr2 (169-310)||(44920942-44921082)
chr2 (184-311)||(31342690-31342817)
chr2 (182-310)||(7718182-7718310)
chr2 (182-311)||(15513664-15513793)
chr2 (185-312)||(24479152-24479279)
chr2 (182-281)||(41573390-41573489)
chr2 (185-310)||(11017457-11017582)
chr2 (185-311)||(7702429-7702555)
chr2 (185-311)||(40016591-40016718)
chr2 (188-290)||(26734754-26734853)
chr2 (182-311)||(22966520-22966651)
chr2 (163-238)||(30553813-30553888)
chr2 (198-258)||(27151259-27151319)
[»] scaffold0069 (1 HSPs)
scaffold0069 (164-311)||(40672-40819)
[»] chr7 (15 HSPs)
chr7 (164-311)||(4685377-4685524)
chr7 (163-312)||(9242457-9242606)
chr7 (164-311)||(10022103-10022250)
chr7 (164-302)||(26224961-26225099)
chr7 (164-305)||(26205395-26205536)
chr7 (185-311)||(20277334-20277460)
chr7 (185-311)||(26621065-26621191)
chr7 (185-309)||(30089735-30089859)
chr7 (185-312)||(26608512-26608639)
chr7 (163-266)||(16170249-16170352)
chr7 (185-309)||(26619080-26619202)
chr7 (182-281)||(3234324-3234424)
chr7 (199-309)||(16086501-16086611)
chr7 (185-225)||(14803120-14803160)
chr7 (185-225)||(15250114-15250154)
[»] scaffold0576 (1 HSPs)
scaffold0576 (164-311)||(6678-6825)
[»] scaffold0002 (1 HSPs)
scaffold0002 (185-305)||(446263-446383)
[»] scaffold1005 (1 HSPs)
scaffold1005 (177-226)||(640-689)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 3e-76; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 79 - 311
Target Start/End: Original strand, 51758668 - 51758879
Alignment:
Q  79 cgttgaaaatcaatttctttctctgcttactatgtaatgaccttgttagctaaggagccataatatattttaggttggttataatcacttctacaataat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||    
T  51758668 cgttgaaaatcaatttctttctctgcttactatgtaatgaccttgttagctaaggagccataatatatttta---------------------caataat 51758746  T
Q  179 gatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttact 278  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  51758747 gacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattattaggtaaagctcgtattact 51758846  T
Q  279 aaagagttttagctacattttatagtattatct 311  Q
    |||||||||||| ||||||||||||||||||||    
T  51758847 aaagagttttagttacattttatagtattatct 51758879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 170 - 288
Target Start/End: Original strand, 16222763 - 16222881
Alignment:
Q  170 tacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagtt 269  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||||||||      
T  16222763 tacaataatgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaagcc 16222862  T
Q  270 cgtgttactaaagagtttt 288  Q
    |||||||||||||||||||    
T  16222863 cgtgttactaaagagtttt 16222881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 185 - 313
Target Start/End: Original strand, 28636903 - 28637031
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||||| ||||||| |||| | ||| ||||||||||||||||   |||| ||||||||    
T  28636903 tagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaagtcactgttgctaaagag 28637002  T
Q  285 ttttagctacattttatagtattatctac 313  Q
     ||||| |||||||||||||| |||||||    
T  28637003 atttagttacattttatagtaatatctac 28637031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 184 - 309
Target Start/End: Original strand, 12189951 - 12190076
Alignment:
Q  184 ttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaaga 283  Q
    |||| |||| || |||| ||||||||||||||||||||| ||| ||||||||||||| |||| | |||||||||||||||||||  ||||||||||||||    
T  12189951 ttagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaagcccgtgttactaaaga 12190050  T
Q  284 gttttagctacattttatagtattat 309  Q
    |||||||  |  ||||||||||||||    
T  12190051 gttttagtaattttttatagtattat 12190076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 162 - 289
Target Start/End: Original strand, 13208588 - 13208716
Alignment:
Q  162 atcacttctacaataatgatatttagtaaca-tttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgtta 260  Q
    |||||| ||||||| |||||||||||||| | |||||||||||||| ||||| ||||||||||||| ||||||||||||| | |||| |||| |||||||    
T  13208588 atcactactacaatgatgatatttagtaatactttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgtta 13208687  T
Q  261 ggtaaagttcgtgttactaaagagtttta 289  Q
    ||||||   ||||||||||||| ||||||    
T  13208688 ggtaaaacccgtgttactaaagtgtttta 13208716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 162 - 273
Target Start/End: Original strand, 15214304 - 15214415
Alignment:
Q  162 atcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttag 261  Q
    |||||| ||||||||| |  ||||||||||| |||||||||| |||||||||||||||||| ||| ||||||||||||| || | | ||||||||||| |    
T  15214304 atcactactacaataacggcatttagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgg 15214403  T
Q  262 gtaaagttcgtg 273  Q
    ||||||||||||    
T  15214404 gtaaagttcgtg 15214415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 5911764 - 5911682
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaag 267  Q
    |||||||| ||||||||| ||||||||||||||||||||||| | ||||||||||| |||||| |||||||||||||||||||    
T  5911764 tagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaaag 5911682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 302
Target Start/End: Original strand, 897455 - 897571
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||| ||| ||||||||||| ||||||| ||||||||||||  ||||||||||||| |||| | ||||||||||||||| |||||| |||||||||||||    
T  897455 tagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggt-aagttcatgttactaaagag 897553  T
Q  285 ttttagctacattttata 302  Q
     | ||| |||||||||||    
T  897554 ctatagttacattttata 897571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 164 - 254
Target Start/End: Complemental strand, 37097461 - 37097371
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaa 254  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | || |||||||| |||| | ||||||    
T  37097461 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 266
Target Start/End: Original strand, 15204574 - 15204675
Alignment:
Q  169 ctacaataatgatatttagtaacatttgaaaattgtaac----taaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggta 264  Q
    |||||||||||| ||||| ||| ||||||||||||||||    ||||||||||||||||||  ||| ||||||||| |||||| ||||||||||||||||    
T  15204574 ctacaataatgacatttaataatatttgaaaattgtaactaactaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggta 15204673  T
Q  265 aa 266  Q
    ||    
T  15204674 aa 15204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 185 - 307
Target Start/End: Original strand, 18308148 - 18308270
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||||||||||||||| |||||||||||||||||||||   |||| | |||  |||| |   |||||||||||||||||   |||||||| ||| |    
T  18308148 tagtaacatttgaaaattgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaagcctgtgttactgaaggg 18308247  T
Q  285 ttttagctacattttatagtatt 307  Q
     ||||| ||||||||||||||||    
T  18308248 ctttagttacattttatagtatt 18308270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 1843930 - 1844078
Alignment:
Q  162 atcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttag 261  Q
    |||||| ||||||||||||  |||||||||| || ||||||||||||  |  ||||||||||||| | ||| ||||||| |||| | |||||||||||||    
T  1843930 atcactactacaataatgacctttagtaacactt-aaaattgtaactggaataagaaaaatgttactgattgaatttagtaacatttgaacaattgttag 1844028  T
Q  262 gtaaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    |||||   | ||||||| ||| | ||||  | ||||||||||||||||||    
T  1844029 gtaaaccccatgttactgaagggctttaattgcattttatagtattatct 1844078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 17112925 - 17113019
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttacta 279  Q
    |||||| | ||||||||||| |||||||||||||||||  || || |||||||| | |||||| ||||||||||||| ||||| || ||||||||    
T  17112925 tagtaataattgaaaattgttactaaatcaagaaaaatagtactagttaaattttgtaacacttgaacaattgttagttaaagctcatgttacta 17113019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 3399642 - 3399703
Alignment:
Q  205 aactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaa 266  Q
    |||||||||| ||||||||||| ||||||||||||| |||| | ||||||||||||||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 3399703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 169 - 239
Target Start/End: Original strand, 15193903 - 15193973
Alignment:
Q  169 ctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaattta 239  Q
    |||| |||| || ||||||||||| |||||||| | ||| |||||||||||||||||| ||||||||||||    
T  15193903 ctactataacgacatttagtaacacttgaaaatagcaacgaaatcaagaaaaatgttactaattaaattta 15193973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 39368730 - 39368614
Alignment:
Q  195 tgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctac 294  Q
    |||||| ||| ||||||||||||||||||||| |||||||| ||||  ||| |   |||||||||||| ||||  | || |||||||||| || || |||    
T  39368730 tgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttaggcaaagcacatgctactaaagagcttcagttac 39368631  T
Q  295 a-ttttatagtattatc 310  Q
    | |||||||||||||||    
T  39368630 atttttatagtattatc 39368614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 19370032 - 19369884
Alignment:
Q  163 tcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttagg 262  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||     
T  19370032 tcactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttaga 19369933  T
Q  263 taaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    |||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  19369932 taaagtccgtgttactaaagagttttagttacattttatagtattatct 19369884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 5528722 - 5528869
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |    
T  5528722 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacactcaaacaattgttagat 5528821  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    |||||  |||||||||||||||||||| ||||||||| ||||||||||    
T  5528822 aaagtctgtgttactaaagagttttagttacattttacagtattatct 5528869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 19448427 - 19448574
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |    
T  19448427 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagat 19448526  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||    
T  19448527 aaagtccgtgttactaaagagttttagttatattttatagtattatct 19448574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 19532649 - 19532502
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |    
T  19532649 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttagat 19532550  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||| ||||||||||||||||||||| || |||||||||||||||||    
T  19532549 aaagtccgtgttactaaagagttttagttatattttatagtattatct 19532502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 18766896 - 18767041
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||    
T  18766896 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatattattaattaaattttgcaacactcaaacaattgttaggt 18766995  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  18766996 aaagtacgtgttactaaagagttttagttacattttatagtattat 18767041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 25637623 - 25637768
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  25637623 cactactacaataatgacatttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggt 25637722  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||  |||||||||||||| |||||| ||||||||||||||||||    
T  25637723 aaagcccgtgttactaaagaattttagttacattttatagtattat 25637768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 163 - 305
Target Start/End: Complemental strand, 28249197 - 28249055
Alignment:
Q  163 tcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttagg 262  Q
    ||||| |||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  28249197 tcactactacaataatggcacttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagg 28249098  T
Q  263 taaagttcgtgttactaaagagttttagctacattttatagta 305  Q
    |||||  ||||||||||||| ||||||| ||||||||||||||    
T  28249097 taaagcccgtgttactaaagtgttttagttacattttatagta 28249055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 162 - 311
Target Start/End: Complemental strand, 45356235 - 45356086
Alignment:
Q  162 atcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttag 261  Q
    |||||| |||||||||||  | || |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  45356235 atcactactacaataatggcaattggtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttag 45356136  T
Q  262 gtaaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||||  ||||||||||||| ||||||| |||||||||||||| |||||    
T  45356135 gtaaagcccgtgttactaaagtgttttagttacattttatagtactatct 45356086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 17634592 - 17634445
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||| ||||||||| |||||    
T  17634592 cactcctacaataatgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggt 17634493  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||  ||||||||||||||  ||||| |||||||||||||| |||||    
T  17634492 aaagcccgtgttactaaagaaatttagttacattttatagtactatct 17634445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 164 - 310
Target Start/End: Original strand, 25638786 - 25638932
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  25638786 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggt 25638885  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    |||   | ||||||||||| ||||||| |||||||||||||| ||||    
T  25638886 aaaacccatgttactaaagtgttttagttacattttatagtactatc 25638932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 6801938 - 6801807
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgtta 276  Q
    |||| ||||||||||| ||||||| | | |||||||||| |||||||||| ||||||||||||| |||| | |||||||||||||||||||  | |||||    
T  6801938 atgagatttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaagcccctgtta 6801839  T
Q  277 ctaaagagttttagctacattttatagtatta 308  Q
    |||||||||||||| ||||||||| |||||||    
T  6801838 ctaaagagttttagttacattttagagtatta 6801807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 29553626 - 29553725
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| | || |||||||||| |||||  ||||||||||||    
T  29553626 atttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaaagcgcgtgttactaaa 29553725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 182 - 302
Target Start/End: Original strand, 6403590 - 6403710
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||||||| |||| | || ||||||||||||||||  ||||||| ||||    
T  6403590 atttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagcccgtgttattaaa 6403689  T
Q  282 gagttttagctacattttata 302  Q
     || || ||  ||||||||||    
T  6403690 aagcttcagtaacattttata 6403710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 5651044 - 5650918
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagt 285  Q
    ||||||| ||||||| | | ||||||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||   | |||||| ||| ||     
T  5651044 agtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaaacccttgttacaaaaaagc 5650945  T
Q  286 tttagctacattttatagtattatcta 312  Q
    ||||| | |||||||| ||||||||||    
T  5650944 tttagttgcattttatggtattatcta 5650918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 186 - 309
Target Start/End: Original strand, 29345432 - 29345556
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa-gag 284  Q
    ||||||| | ||||||||||||||||||||||||||| ||| ||||||||||||| |||  | |||||||||||||||||||  | | ||||||||  |     
T  29345432 agtaacactcgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaagcccctcttactaaacaaa 29345531  T
Q  285 ttttagctacattttatagtattat 309  Q
     ||||| ||||||||||||||||||    
T  29345532 ctttagttacattttatagtattat 29345556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 266
Target Start/End: Original strand, 31347346 - 31347430
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaa 266  Q
    ||||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||| |||| | || |||||||||| ||||    
T  31347346 atttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaa 31347430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 31369209 - 31369081
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||| ||||||||||||| || |||||||||| || |||||||| ||||||| |||||  ||| |  ||||| ||||| |||||| |  ||||||||||    
T  31369209 atttaataacatttgaaaaatgaaactaaatcacgataaatgttactaattaagtttagtgacatttaaacaaatgttatgtaaagcttatgttactaaa 31369110  T
Q  282 gagttttagctacattttatagtattatc 310  Q
    |||||| || |||||||||||| ||||||    
T  31369109 gagtttcagttacattttataggattatc 31369081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 6223446 - 6223525
Alignment:
Q  230 attaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||||||||| |||| | | | |||||||||||||||  ||||||||||||||||||||| |||| |||||| ||||||    
T  6223446 attaaatttagtaacatttgtaaaattgttaggtaaagcgcgtgttactaaagagttttagttacactttataatattat 6223525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 308
Target Start/End: Original strand, 14997621 - 14997744
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||| ||| ||||||||| | ||||| ||||||||||||||| |  ||||| |||| |||| | | | ||||||||||||||   | |||||||||||||    
T  14997621 tagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaaacccatgttactaaagag 14997720  T
Q  285 ttttagctacattttatagtatta 308  Q
     ||||| ||| |||||||||||||    
T  14997721 ctttagttaccttttatagtatta 14997744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 19341524 - 19341425
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaa-aaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaa 280  Q
    ||||||||||| || ||||||||||||||||||| || |||||||| || ||| || | | |||| | | |||| ||||||||||||  |||||||||||    
T  19341524 atttagtaacaattcaaaattgtaactaaatcaaaaataaatgttactatttagatcttgaaacatttg-acaaatgttaggtaaagaccgtgttactaa 19341426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 164 - 309
Target Start/End: Complemental strand, 14669467 - 14669322
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||    
T  14669467 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaataattgttaggt 14669368  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||    
T  14669367 aaagtccgtgttactaaagagttttagttacattttatagtattat 14669322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 172 - 311
Target Start/End: Original strand, 12591820 - 12591959
Alignment:
Q  172 caataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcg 271  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||  ||    
T  12591820 caataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaagcccg 12591919  T
Q  272 tgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||||||||||||||||| |||| |||||||||||||||    
T  12591920 tgttactaaagagttttagttacaatttatagtattatct 12591959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 17719844 - 17719697
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||| |    
T  17719844 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaatttttgcaacactcgaacaattgttagat 17719745  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  17719744 aaagtccgtgttactaaagagttttagttacaatttatagtattatct 17719697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 163 - 312
Target Start/End: Original strand, 6684072 - 6684220
Alignment:
Q  163 tcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttagg 262  Q
    ||||| |||||||||||  ||||||||||| || |||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| |||||||||    
T  6684072 tcactactacaataatggcatttagtaacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaacactcgaac-attgttagg 6684170  T
Q  263 taaagttcgtgttactaaagagttttagctacattttatagtattatcta 312  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  6684171 taaagtccatgttactaaagagttttagttacattttatagtattatcta 6684220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 11936888 - 11936741
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |    
T  11936888 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagat 11936789  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||  ||||||||||||| ||||||| |||||||||||||| |||||    
T  11936788 aaagcccgtgttactaaagtgttttagttacattttatagtactatct 11936741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 16734784 - 16734931
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||    
T  16734784 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggt 16734883  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||  ||||||||||||| ||||||| |||||||||||||| |||||    
T  16734884 aaagcccgtgttactaaagtgttttagttacattttatagtactatct 16734931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 15361694 - 15361841
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| ||||||||||| || ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  15361694 cactactacaataatggtaattagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggt 15361793  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||   |||||||||||  ||||||| |||||||||||||| |||||    
T  15361794 aaagccggtgttactaaaatgttttagttacattttatagtactatct 15361841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 197 - 311
Target Start/End: Complemental strand, 11948835 - 11948721
Alignment:
Q  197 aaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacat 296  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||  ||||||||||||| ||||||| |||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagtgttttagttacat 11948736  T
Q  297 tttatagtattatct 311  Q
    ||||||||| |||||    
T  11948735 tttatagtactatct 11948721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 169 - 268
Target Start/End: Original strand, 15690422 - 15690521
Alignment:
Q  169 ctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagt 268  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  |||||| |||||||||||| ||||||    
T  15690422 ctacaataaagacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtgacactcaaacaattgttagctaaagt 15690521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 23264587 - 23264471
Alignment:
Q  194 ttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagcta 293  Q
    ||||||||||| ||||||||||||||| ||||| ||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||| || ||| |    
T  23264587 ttgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaaatccgtgttactaaagagcttcagcaa 23264488  T
Q  294 cattttatagtattatc 310  Q
     | ||||||||||||||    
T  23264487 aactttatagtattatc 23264471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 10070636 - 10070778
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||| |||  |||||||||| ||  || || |||||||||||| |||| ||||| ||||||||||||  ||||||| || |||||||| ||    
T  10070636 cactactacaatattgacgtttagtaacactt--aagttataactaaatcaacaaaattgttactaattaaatttaataacactcaaataattgttacgt 10070733  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||    
T  10070734 aaagtccgtgttactaaa-agttttagttacattttatagtattat 10070778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 187 - 301
Target Start/End: Complemental strand, 29668015 - 29667899
Alignment:
Q  187 gtaacatttgaaaattgtaactaaatcaa--gaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||| |||||||||||||| |||||||  ||||||||||| ||||||||||||| |||| | ||||||||||||||||||| | |||||| |||||||    
T  29668015 gtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagcttgtgttattaaagag 29667916  T
Q  285 ttttagctacattttat 301  Q
     |||||  |||||||||    
T  29667915 atttagtaacattttat 29667899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 182 - 311
Target Start/End: Complemental strand, 9631258 - 9631128
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| ||||||| | | ||||||||||||| || |||| ||| ||||||||| |||| | |||||||||||||| | ||  | |||||||| |    
T  9631258 atttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttaggcatagcccctgttactata 9631159  T
Q  282 gagttttagctaca-ttttatagtattatct 311  Q
    ||||||||| |||| ||||| ||||||||||    
T  9631158 gagttttagttacatttttagagtattatct 9631128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 281
Target Start/End: Complemental strand, 27970019 - 27969921
Alignment:
Q  183 tttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||| || || |||||||||||| |  ||||| |||||||||||||   ||||||||||    
T  27970019 tttagtaacatttgaaaattgtaaccaaagcaagaaatatgttactatttcaatttagcaacatttcaacaaatgttaggtaaagtctatgttactaaa 27969921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 290
Target Start/End: Complemental strand, 4485665 - 4485560
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    ||||| || ||||||| || |||||||||||| |||||| || ||||||||||||| || | | ||| |||||||||||||||| ||||||| |||| ||    
T  4485665 tagtatcagttgaaaaatgcaactaaatcaaggaaaatggtactaattaaatttagtaatatttgaataattgttaggtaaagtccgtgttattaaatag 4485566  T
Q  285 ttttag 290  Q
    ||||||    
T  4485565 ttttag 4485560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 169 - 309
Target Start/End: Original strand, 34374809 - 34374951
Alignment:
Q  169 ctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaac--aattgttaggtaaa 266  Q
    |||||| | ||| ||| ||||||| || |||| ||||| ||||||||||||||||||| |||||| |||| | |||| | ||||  |||||||||| |||    
T  34374809 ctacaacattgagattaagtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaattatattttgtaacatttgaacaaaattgttaggcaaa 34374908  T
Q  267 gttcgtgttactaaagagttttagctacattttatagtattat 309  Q
     |  ||||||||||||||||| ||  | |||||||||||||||    
T  34374909 atctgtgttactaaagagtttgagtaatattttatagtattat 34374951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 311
Target Start/End: Complemental strand, 23904452 - 23904327
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| ||||||||||  ||||||| |||||||| |||| ||| | ||||||| |||| | |||||||||||||||||||  | | |||| ||||||    
T  23904452 tagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaagcccctcttacaaaagag 23904353  T
Q  285 ttttagctacattttatagtattatct 311  Q
     ||||  |||| |||||||||||||||    
T  23904352 gttta-ttacactttatagtattatct 23904327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 1942566 - 1942695
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    |||| ||||||||||| |||||||||||||||||||||||| ||| | || |||||||  |||| | || |||||| ||||||||     ||||| ||||    
T  1942566 atttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggtaaaacctttgttattaaa 1942665  T
Q  282 gagttttagctacattttatagtattatct 311  Q
     |  ||||| ||||||||||||||||||||    
T  1942666 tatctttagttacattttatagtattatct 1942695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 2941001 - 2941102
Alignment:
Q  181 tatttagtaacatttgaaaattgtaactaaatcaagaaaa-atgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttacta 279  Q
    ||||||| ||||||| ||||||||||| ||||||| |||| |||||| ||||||  ||||| |||| | || ||| |||||||||||||| |||||||||    
T  2941001 tatttaggaacatttaaaaattgtaacaaaatcaaaaaaagatgttactaattatgtttagtaacatttgagcaaatgttaggtaaagtttgtgttacta 2941100  T
Q  280 aa 281  Q
    ||    
T  2941101 aa 2941102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 284
Target Start/End: Complemental strand, 30481315 - 30481229
Alignment:
Q  198 aaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    ||||||| ||||||||||||||||||||  ||||||||| ||| |||| | |||||| | |||| ||||| || |||||||||||||    
T  30481315 aaattgttactaaatcaagaaaaatgttgctaattaaatctagtaacaattgaacaaattttagataaagatcatgttactaaagag 30481229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 4591147 - 4591191
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    ||||||||||||||||||||| | |||||||||||||||||||||    
T  4591147 atttagtaacatttgaaaattattactaaatcaagaaaaatgtta 4591191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 6673721 - 6673677
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    ||||||||||| ||||||| |||||||||||||||||||||||||    
T  6673721 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 6673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 206 - 266
Target Start/End: Complemental strand, 10935860 - 10935800
Alignment:
Q  206 actaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaa 266  Q
    ||||||||| ||||||||||| |||||| ||  || |||| | ||||||||||||||||||    
T  10935860 actaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 10935800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 17037520 - 17037669
Alignment:
Q  162 atcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttag 261  Q
    |||||| |||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||    
T  17037520 atcactactacaataatgacatttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttag 17037619  T
Q  262 gtaaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    |||||||  |||||||||||||||||||| ||||||||||||||||||||    
T  17037620 gtaaagtcagtgttactaaagagttttagttacattttatagtattatct 17037669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 309
Target Start/End: Original strand, 23679420 - 23679565
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||| |    
T  23679420 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagat 23679519  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  23679520 aaagttcgtgttactaaagagttttagttacattttatagtattat 23679565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 164 - 309
Target Start/End: Complemental strand, 23855391 - 23855246
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||| |||| |    
T  23855391 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaattttgcaacattcgaacaattattagat 23855292  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||    
T  23855291 aaagttcgtgttactaaagagttttagttacattttatagtattat 23855246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 5079185 - 5079038
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  5079185 cactactacaataatgacaattagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggt 5079086  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||  ||||||||||||| ||||||| |||||||||||||| |||||    
T  5079085 aaagcccgtgttactaaagtgttttagttacattttatagtactatct 5079038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 7410803 - 7410944
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| | |||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||    
T  7410803 cactactacaataatgacaattagtaacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggt 7410902  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagta 305  Q
    ||||  ||||||||||||| ||||||| ||||||||||||||    
T  7410903 aaagcccgtgttactaaagtgttttagttacattttatagta 7410944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 277
Target Start/End: Complemental strand, 31069083 - 31068971
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||||||||||    
T  31069083 cactactacaataatgacatttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaaca-ttgaacaattgttaggt 31068985  T
Q  264 aaagttcgtgttac 277  Q
    ||||  ||||||||    
T  31068984 aaagcccgtgttac 31068971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 19984995 - 19985119
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| | |||||| |||||||||||||| ||||||||| |||||| |||||| |||| | ||| |||||||||||||||| |  ||||||||||||    
T  19984995 tagtaacactcgaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaagtccaggttactaaagag 19985094  T
Q  285 ttttagctacattttatagtattat 309  Q
    |||||| ||||||||||||||||||    
T  19985095 ttttagttacattttatagtattat 19985119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 12042276 - 12042152
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaag-ttcgtgttactaaagag 284  Q
    ||||| ||||||||||||||||||||||||||||||||||| | ||| ||||||| |||| | |||||||||||||||||||   | | |||||||||||    
T  12042276 agtaatatttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaagaaacctattactaaagag 12042177  T
Q  285 ttttagctacattttatagtattat 309  Q
    |||||| ||||||||||| ||||||    
T  12042176 ttttagttacattttatattattat 12042152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 9333664 - 9333565
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    |||| |||||| |||||||||||||| |||||||||||||||||| ||||||||||||| |||| | || |||||||||||||||||   ||||||||||    
T  9333664 attttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagtcgatgttactaaa 9333565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 9354492 - 9354393
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||  |||| | || ||||||||||||||||  | ||||||||||    
T  9354492 atttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaagcccatgttactaaa 9354393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 185 - 301
Target Start/End: Original strand, 30786267 - 30786383
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| ||||||||||||||| ||||||||||||||||| | ||| ||||||| |||| | ||| ||||||||||||||   | |||||||||| ||    
T  30786267 tagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaaaag 30786366  T
Q  285 ttttagctacattttat 301  Q
     |||||  |||||||||    
T  30786367 atttagtcacattttat 30786383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 37233061 - 37233157
Alignment:
Q  214 aagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    |||||||| |||| ||||||||||||| |||| | || ||||||||||||| ||| |||||||||||| ||||| ||  ||||||||||||||||||    
T  37233061 aagaaaaaagttactaattaaatttagtaacatttgagcaattgttaggtatagtccgtgttactaaaaagtttcagtaacattttatagtattatc 37233157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 18191952 - 18191889
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaaca 245  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||| ||||    
T  18191952 atttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaaca 18191889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 164 - 223
Target Start/End: Complemental strand, 31406472 - 31406413
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatg 223  Q
    |||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  31406472 cactactacaataatgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 31406413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 200 - 307
Target Start/End: Complemental strand, 40402094 - 40401987
Alignment:
Q  200 attgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacatttt 299  Q
    ||||| ||||||| ||||||||||||| |||||||||||||  ||  | ||||||||||||||||||||  ||||| ||||| || || ||| |||||||    
T  40402094 attgtgactaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaagtctgtgttgctaaaaagcttcagcaacatttt 40401995  T
Q  300 atagtatt 307  Q
    ||||||||    
T  40401994 atagtatt 40401987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 11833344 - 11833281
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaaca 245  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| |||||| || ||||||||    
T  11833344 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagcaaca 11833281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 216 - 310
Target Start/End: Original strand, 42076078 - 42076172
Alignment:
Q  216 gaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    ||||| ||||| ||||||||||||| |||| | ||||||||||||| |||||| | |||||||||| || || ||  | ||||||||||||||||    
T  42076078 gaaaattgttactaattaaatttagtaacatttgaacaattgttagataaagtccatgttactaaaaagcttcaggaatattttatagtattatc 42076172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 10869450 - 10869516
Alignment:
Q  197 aaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggta 264  Q
    ||||||||| |||||||| ||||| ||||| ||||||||||||| |||| | ||||||||||||||||    
T  10869450 aaaattgta-ctaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggta 10869516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 28080092 - 28080141
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    |||| |||||||||||||| |||| ||||| |||||||||||||||||||    
T  28080092 atgagatttagtaacatttaaaaaatgtaattaaatcaagaaaaatgtta 28080141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 31571029 - 31571158
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaac----actcgaacaattgttaggtaaagttcgtgttactaa 280  Q
    |||||||| ||||||||||| | |||| |||||||||||||| | |||||| |||| |||    |   | ||||||||||||||||   | |||||||||    
T  31571029 tagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacatatatatgtacaattgttaggtaaaacccatgttactaa 31571128  T
Q  281 agagttttagctacattttatagtattatc 310  Q
    |||| ||||| | |||| ||||||||||||    
T  31571129 agagctttagatccattatatagtattatc 31571158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 11499950 - 11499999
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    |||| ||||||||||| || |||||||||||||||| || ||||||||||    
T  11499950 atgaaatttagtaacacttaaaaattgtaactaaataaaaaaaaatgtta 11499999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 11507337 - 11507386
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    |||| ||||||||||| || |||||||||||||||| || ||||||||||    
T  11507337 atgaaatttagtaacacttaaaaattgtaactaaataaaaaaaaatgtta 11507386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 11514709 - 11514758
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    |||| ||||||||||| || |||||||||||||||| || ||||||||||    
T  11514709 atgaaatttagtaacacttaaaaattgtaactaaataaaaaaaaatgtta 11514758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 11522110 - 11522159
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    |||| ||||||||||| || |||||||||||||||| || ||||||||||    
T  11522110 atgaaatttagtaacacttaaaaattgtaactaaataaaaaaaaatgtta 11522159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 11529523 - 11529572
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    |||| ||||||||||| || |||||||||||||||| || ||||||||||    
T  11529523 atgaaatttagtaacacttaaaaattgtaactaaataaaaaaaaatgtta 11529572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 226
Target Start/End: Complemental strand, 12004612 - 12004569
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    ||||||||||| |||||| || |||||||||||||||||||||||    
T  12004612 atttagtaacaattgaaa-ttctaactaaatcaagaaaaatgtta 12004569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 17535371 - 17535411
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgtt 225  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  17535371 tagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 17535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 164 - 312
Target Start/End: Complemental strand, 868 - 720
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |    
T  868 cactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagat 769  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatcta 312  Q
    ||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  768 aaagtccatgttactaaagagttttagttacattttatagtattatcta 720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 1685074 - 1684926
Alignment:
Q  163 tcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttagg 262  Q
    ||||| ||| |||||||| |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||     
T  1685074 tcactactataataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaattttgcaacactcgaacaattgttaga 1684975  T
Q  263 taaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    |||||| ||||||||||||||||||||| |||| |||||||||||||||    
T  1684974 taaagtccgtgttactaaagagttttagttacaatttatagtattatct 1684926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 47066155 - 47066009
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  47066155 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggt 47066056  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    ||||  |||||||| |||||||||||| |||||||||||||| ||||    
T  47066055 aaagcccgtgttaccaaagagttttagttacattttatagtactatc 47066009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 1152021 - 1152170
Alignment:
Q  162 atcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttag 261  Q
    |||||| |||||||||||| |||||| |||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  1152021 atcactactacaataatgacatttagcaacacttgaaaattgtaactaaattaagaaaaatgttactaattaaattttgcaacactcaaacaattgttag 1152120  T
Q  262 gtaaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
     |||||| ||||||||||||||||||||| |||| |||||| ||||||||    
T  1152121 ataaagtccgtgttactaaagagttttagttacagtttataatattatct 1152170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 162 - 311
Target Start/End: Original strand, 43600244 - 43600393
Alignment:
Q  162 atcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttag 261  Q
    |||||| |||||||||||  | || |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||    
T  43600244 atcactactacaataatggcaattggtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttag 43600343  T
Q  262 gtaaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||||  ||||||||||||| ||||||| |||||||||||||| |||||    
T  43600344 gtaaagcccgtgttactaaagtgttttagttacattttatagtactatct 43600393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 164 - 310
Target Start/End: Original strand, 53300330 - 53300476
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||   ||||||||||||||    
T  53300330 cactactacaataatgacatttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggt 53300429  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    ||||  |||||||| |||||||||||| |||||||||| ||| ||||    
T  53300430 aaagcccgtgttaccaaagagttttagttacattttatcgtactatc 53300476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 24559098 - 24558970
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||| |||| | |||| |||||||||||| |   |||||||||||    
T  24559098 atttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaacggctgtgttactaaa 24558999  T
Q  282 gagttttagctacattttatagtattatc 310  Q
    || ||||||  | ||||||||||||||||    
T  24558998 gaattttagtgatattttatagtattatc 24558970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 4881168 - 4881054
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagt 285  Q
    ||||||| ||||||||||| ||||||||||||||||||||| | ||||||||||| || | | | | |||||||||||||||| ||||||||||||| |     
T  4881168 agtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaagtccgtgttactaaagtgc 4881069  T
Q  286 tttagctacatttta 300  Q
    ||||| | |||||||    
T  4881068 tttagttgcatttta 4881054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 186 - 300
Target Start/End: Complemental strand, 4904239 - 4904125
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagt 285  Q
    ||||||| || |||||||| ||||||||| ||||||||||| | ||||||||||| |||| | | |||||||||||||||||  | ||||||||||| |     
T  4904239 agtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaagcacttgttactaaagtgc 4904140  T
Q  286 tttagctacatttta 300  Q
    ||||| |||||||||    
T  4904139 tttagttacatttta 4904125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 201 - 310
Target Start/End: Complemental strand, 21539355 - 21539247
Alignment:
Q  201 ttgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacatttta 300  Q
    |||||||||||||||| ||||||||| | ||||||||||| |||| |  |||||||||||| | |||| | ||||||||||||| ||||| ||||||||     
T  21539355 ttgtaactaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttagat-aagtccttgttactaaagagatttagttacattttt 21539257  T
Q  301 tagtattatc 310  Q
    ||||||||||    
T  21539256 tagtattatc 21539247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 312
Target Start/End: Complemental strand, 37751088 - 37750963
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagt 285  Q
    |||||||| |||||||||| |||||||||| |||||||||| |||||||| | || |||| | |  |||||||||| |||||    |||||||||  ||     
T  37751088 agtaacatatgaaaattgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacatttgcgcaattgttagataaagccaatgttactaagaagc 37750990  T
Q  286 tttagctacattttatagtattatcta 312  Q
    ||||| |||||||||||||||||||||    
T  37750989 tttagttacattttatagtattatcta 37750963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 194 - 263
Target Start/End: Original strand, 48464049 - 48464118
Alignment:
Q  194 ttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    ||||||||||| ||||||| || |||||||||| ||||||||||||| |||| | |||||||||||||||    
T  48464049 ttgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 27739807 - 27739749
Alignment:
Q  253 aattgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    |||||||||||||||  | ||||||| ||||| ||||| ||||||||||||||||||||    
T  27739807 aattgttaggtaaagcccatgttactgaagagctttagttacattttatagtattatct 27739749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 310
Target Start/End: Original strand, 48465443 - 48465498
Alignment:
Q  255 ttgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    |||||||||||| || ||||||||||| ||||| ||  ||||||||||||||||||    
T  48465443 ttgttaggtaaaatttgtgttactaaaaagtttcagtaacattttatagtattatc 48465498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 260
Target Start/End: Complemental strand, 26075300 - 26075222
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgtta 260  Q
    ||||||||||| |  |||||||| | || |||||||||| ||||| ||| ||||||| | |||| ||||||||||||||    
T  26075300 atttagtaacaataaaaaattgttattagatcaagaaaattgttactaagtaaattttgtaacattcgaacaattgtta 26075222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 226
Target Start/End: Complemental strand, 4923732 - 4923692
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    ||||||| || |||||||| |||||||||||||||||||||    
T  4923732 agtaacacttaaaaattgttactaaatcaagaaaaatgtta 4923692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 169 - 311
Target Start/End: Original strand, 13845976 - 13846118
Alignment:
Q  169 ctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagt 268  Q
    |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||     
T  13845976 ctacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagc 13846075  T
Q  269 tcgtgttactaaagagttttagctacattttatagtattatct 311  Q
     ||||||||||||| ||||||| |||||||||||||| |||||    
T  13846076 ccgtgttactaaagtgttttagttacattttatagtactatct 13846118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 173 - 309
Target Start/End: Complemental strand, 1628059 - 1627923
Alignment:
Q  173 aataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgt 272  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| |||||||||||| ||||||| |||    
T  1628059 aataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaagtccgt 1627960  T
Q  273 gttactaaagagttttagctacattttatagtattat 309  Q
    ||||| |||||||||||| ||||||||||||||||||    
T  1627959 gttacaaaagagttttagttacattttatagtattat 1627923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 164 - 310
Target Start/End: Complemental strand, 7407875 - 7407729
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||  | ||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||    
T  7407875 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggt 7407776  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    ||||  ||||||||||||| ||||||| |||||||||||||| ||||    
T  7407775 aaagcccgtgttactaaagtgttttagttacattttatagtactatc 7407729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 164 - 305
Target Start/End: Original strand, 2550145 - 2550286
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||  | || |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  2550145 cactactacaataatggcaattggtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggt 2550244  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagta 305  Q
    ||||   |||||||||||| ||||||| ||||||||||||||    
T  2550245 aaagcctgtgttactaaagtgttttagttacattttatagta 2550286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 1654555 - 1654702
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||  | ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||    
T  1654555 cactactacaataatggcaattagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagt 1654654  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||   |||||| ||||| ||||||| |||||||||||||| |||||    
T  1654655 aaagcctgtgttattaaagtgttttagttacattttatagtactatct 1654702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 194 - 311
Target Start/End: Complemental strand, 2943305 - 2943188
Alignment:
Q  194 ttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagcta 293  Q
    |||||| |||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||| |||  ||||||||||||| ||||||| ||    
T  2943305 ttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggttaagcccgtgttactaaagtgttttagtta 2943206  T
Q  294 cattttatagtattatct 311  Q
    ||||||||||||||||||    
T  2943205 cattttatagtattatct 2943188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 189 - 302
Target Start/End: Complemental strand, 16457427 - 16457314
Alignment:
Q  189 aacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagtttt 288  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||| | || |||||||||||||||| ||||||||||||| || ||     
T  16457427 aacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaagctcgtgttactaaaaagcttc 16457328  T
Q  289 agctacattttata 302  Q
    ||  ||||||||||    
T  16457327 agtaacattttata 16457314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 186 - 307
Target Start/End: Original strand, 26707860 - 26707981
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagt 285  Q
    |||||||||||||||| || ||||||||||||||||||||| ||||||||||||| |||| | ||||||||||||||||||||   |||||||||||||     
T  26707860 agtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaagtctctgttactaaagagg 26707959  T
Q  286 tttagctacattttatagtatt 307  Q
    || ||  |||||| ||||||||    
T  26707960 ttcagtaacatttcatagtatt 26707981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 36035301 - 36035413
Alignment:
Q  197 aaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacat 296  Q
    |||||||  |||||||||||||||||  || ||||||||||||| |||| | | ||||||||||||||||| |||||||||||||||| ||||| |||||    
T  36035301 aaaattggtactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaagctcgtgttactaaagagctttagttacat 36035400  T
Q  297 tttatagtattat 309  Q
    |||||||||||||    
T  36035401 tttatagtattat 36035413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 9633545 - 9633418
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| ||||||| | | |||||||| | |||||||||| |||||||||||||  ||| |  ||||||||||||||||||  | ||||||||||    
T  9633545 atttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaagcccctgttactaaa 9633446  T
Q  282 gagttttagctacattttatagtattat 309  Q
    ||||||||| ||||||||| || |||||    
T  9633445 gagttttagttacattttagagcattat 9633418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 281
Target Start/End: Complemental strand, 1613316 - 1613217
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| ||||||| ||||||||||||||||||||||||| ||| ||||||||| |||| | || ||||| ||||||||||  | ||||||||||    
T  1613316 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaa 1613217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 5498475 - 5498581
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| || |||| ||||||||||||||||||||||||| ||||||||||||| |||    ||||||||||||||||||     ||||||||||    
T  5498475 atttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaacctatgttactaaa 5498574  T
Q  282 gagtttt 288  Q
    |||||||    
T  5498575 gagtttt 5498581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 311
Target Start/End: Original strand, 35082990 - 35083102
Alignment:
Q  199 aattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacattt 298  Q
    |||||| || |||||||||||||||||||||| ||||||||| || | | ||||||||||||| ||||   | |||||  || ||| ||||| |||| ||    
T  35082990 aattgttacaaaatcaagaaaaatgttagtaaataaatttagtaatatttgaacaattgttagataaaacccttgttagaaatgagctttagttacaatt 35083089  T
Q  299 tatagtattatct 311  Q
    |||||||||||||    
T  35083090 tatagtattatct 35083102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 27259548 - 27259474
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaatt 256  Q
    ||||||||||| ||||||| | | ||||||||||| ||||||||| ||||||||||||| |||| | ||||||||    
T  27259548 atttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 309
Target Start/End: Complemental strand, 27713539 - 27713415
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    |||||||||||||| |||| ||||||||| |||| |||   |||| ||||||||||||| |||| |  || |||||||||| |||     ||||||||||    
T  27713539 atttagtaacatttaaaaaatgtaactaattcaaaaaa---gttactaattaaatttagtaacatttaaataattgttaggcaaaacctatgttactaaa 27713443  T
Q  282 gagttttagctacattttatagtattat 309  Q
     ||||||||| | |||||||||||||||    
T  27713442 tagttttagcaatattttatagtattat 27713415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 311
Target Start/End: Original strand, 2179926 - 2180053
Alignment:
Q  186 agtaacatttgaaaattgtaactaaatcaagaaaaa--tgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaaga 283  Q
    |||||||  |||||||||| ||||||| || |||||  ||||| | ||||||||||| | || | |||||||| || |||||| | | ||||||||||||    
T  2179926 agtaacacctgaaaattgttactaaataaaaaaaaaaatgttaatgattaaatttagaatcatttgaacaattcttgggtaaattccctgttactaaaga 2180025  T
Q  284 gttttagctacattttatagtattatct 311  Q
    | ||||| || |||||||||| ||||||    
T  2180026 gctttagttatattttatagtgttatct 2180053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 28745043 - 28745099
Alignment:
Q  253 aattgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    |||||||||||||||  | ||||||||||||||||||| ||||||||| ||||||||    
T  28745043 aattgttaggtaaagcacatgttactaaagagttttagttacattttagagtattat 28745099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 36035535 - 36035588
Alignment:
Q  256 tgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||||||||||  | ||||| | ||||||||||||||||||||||||||||||    
T  36035535 tgttaggtaaagcccatgttatttaagagttttagctacattttatagtattat 36035588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 309
Target Start/End: Original strand, 26735681 - 26735758
Alignment:
Q  232 taaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacattttatagtattat 309  Q
    ||||||||| |||| | |||||||||||||||||| | | ||||||||||||| || |   |||||| ||||||||||    
T  26735681 taaatttagtaacatttgaacaattgttaggtaaaatccatgttactaaagagcttcaataacatttcatagtattat 26735758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 164 - 310
Target Start/End: Original strand, 30266982 - 30267128
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||    
T  30266982 cactactacaataatgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggt 30267081  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    ||||  |||||||| |||||||||||| |||||||||||||| ||||    
T  30267082 aaagcccgtgttaccaaagagttttagttacattttatagtactatc 30267128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 169 - 310
Target Start/End: Original strand, 44920942 - 44921082
Alignment:
Q  169 ctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagt 268  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||| |||||   ||||||||||||||||||     
T  44920942 ctacaataatgacatttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaagc 44921040  T
Q  269 tcgtgttactaaagagttttagctacattttatagtattatc 310  Q
    |||||||||||||||||||||| |||||||||||||| ||||    
T  44921041 tcgtgttactaaagagttttagttacattttatagtactatc 44921082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 184 - 311
Target Start/End: Complemental strand, 31342817 - 31342690
Alignment:
Q  184 ttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaaga 283  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||  |||||||||||||     
T  31342817 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaagcccgtgttactaaagt 31342718  T
Q  284 gttttagctacattttatagtattatct 311  Q
    ||||||| |||||||||||||| |||||    
T  31342717 gttttagttacattttatagtactatct 31342690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 7718182 - 7718310
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||| | ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||  ||||||||||||| |||||| ||||||||||||    
T  7718182 atttagtaatacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaagtccgtgttactaaa 7718281  T
Q  282 gagttttagctacattttatagtattatc 310  Q
    ||||||||  |||||||||||||| ||||    
T  7718282 gagttttaattacattttatagtactatc 7718310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 15513664 - 15513793
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    ||||||||||| || |||||||||| ||||||||||||||||||| || |||||||| | |||||| ||||||||||||||||||| |||||||||||||    
T  15513664 atttagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaagctcgtgttactaaa 15513763  T
Q  282 gagttttagctacattttatagtattatct 311  Q
     || ||||| |||||||||||||| |||||    
T  15513764 aagatttagttacattttatagtactatct 15513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 185 - 312
Target Start/End: Original strand, 24479152 - 24479279
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| ||||||||| | |||||||||||| || ||||| ||||||||||||| |||| | |||||||| |||||||||| ||||||||||||||||    
T  24479152 tagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaagctcgtgttactaaagag 24479251  T
Q  285 ttttagctacattttatagtattatcta 312  Q
     ||||| || ||||||||||||||||||    
T  24479252 ctttagttatattttatagtattatcta 24479279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 41573390 - 41573489
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaa 281  Q
    |||||||||||||  |||| ||||||||||||||||||||||||| ||||||||||||| |||| |  |||||||||||||||||   ||||||||||||    
T  41573390 atttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaaaccccgtgttactaaa 41573489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 185 - 310
Target Start/End: Original strand, 11017457 - 11017582
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| |||||||  || ||||||| ||||||| ||||| ||||||||||||| |||| | || ||||||||||||||||| |||||||||||| ||    
T  11017457 tagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaagtccgtgttactaaaaag 11017556  T
Q  285 ttttagctacattttatagtattatc 310  Q
     || ||  ||| ||||||||||||||    
T  11017557 cttcagtaacactttatagtattatc 11017582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 7702429 - 7702555
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    ||||||||  |||||||| | ||||||| || |||||||||| |||||||| |||| |||| | | |||||||||||||||||  | | |||||||||||    
T  7702429 tagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccatattactaaagag 7702528  T
Q  285 ttttagctacattttatagtattatct 311  Q
     ||||| |||||||| |||||||||||    
T  7702529 ctttagttacattttgtagtattatct 7702555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 185 - 311
Target Start/End: Original strand, 40016591 - 40016718
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| ||||||||| | | ||||||||| ||||||||| | ||||||||||| |||| | ||| |||||||||||||||  | | |||||||||||    
T  40016591 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaagaccctattactaaagag 40016690  T
Q  285 -ttttagctacattttatagtattatct 311  Q
     |||||  |||||||||| |||||||||    
T  40016691 attttaattacattttattgtattatct 40016718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 290
Target Start/End: Original strand, 26734754 - 26734853
Alignment:
Q  188 taacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttt 287  Q
    |||||||||||||||||   ||||||||||||||  ||| |||||||||||||||| | | ||| |||||||||||||||| | | ||| ||||||| ||    
T  26734754 taacatttgaaaattgt---taaatcaagaaaaaacttattaattaaatttagcaatatttgaataattgttaggtaaagtccatattattaaagagctt 26734850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 311
Target Start/End: Original strand, 22966520 - 22966651
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaa--aaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttacta 279  Q
    ||||||||||| ||||||| | | ||||||| || ||  |||| ||| |||| ||||||||  ||| |  ||||||||||||||||||  | ||||||||    
T  22966520 atttagtaacacttgaaaactattactaaataaaaaataaaatattactaatgaaatttagttacatttaaacaattgttaggtaaagcccctgttacta 22966619  T
Q  280 aagagttttagctacattttatagtattatct 311  Q
    ||||  ||||| ||||||||| ||||||||||    
T  22966620 aagacctttagttacattttagagtattatct 22966651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 30553813 - 30553888
Alignment:
Q  163 tcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaattt 238  Q
    ||||| |||||||||  | |||||| |||| |||||||||||||| | |||||||||||||| | |||||||||||    
T  30553813 tcactactacaataacaacatttagcaacacttgaaaattgtaacaacatcaagaaaaatgtcattaattaaattt 30553888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 27151319 - 27151259
Alignment:
Q  198 aaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgt 258  Q
    ||||||| ||||||||||||||||||| | |||||||| ||||  ||||| | ||||||||    
T  27151319 aaattgttactaaatcaagaaaaatgtcactaattaaaattagtgacacttgtacaattgt 27151259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 40819 - 40672
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| |||||| || | ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||| |    
T  40819 cactactacaataatgacatttagcaatacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgcaacactcgaacaattgttagat 40720  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  40719 aaagtccatgttactaaagagttttagttacattttatagtattatct 40672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 164 - 311
Target Start/End: Complemental strand, 4685524 - 4685377
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4685524 cactactacaataatggcaattagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggt 4685425  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||  ||| ||||||||| ||||||| |||||||||||||| |||||    
T  4685424 aaagcccgtattactaaagtgttttagttacattttatagtactatct 4685377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 163 - 312
Target Start/End: Complemental strand, 9242606 - 9242457
Alignment:
Q  163 tcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttagg 262  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||||| ||||| ||||||||||| | |||||| |||||||||||||     
T  9242606 tcactactacaataatgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttaga 9242507  T
Q  263 taaagttcgtgttactaaagagttttagctacattttatagtattatcta 312  Q
    |||||| | ||||||||||||||||||| |||||||||||||||||||||    
T  9242506 taaagtccatgttactaaagagttttagttacattttatagtattatcta 9242457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 10022103 - 10022250
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| ||| |||||||| ||||||||||| |||||||||||||||||||||  |||||||||| ||||||| ||||| |||||  |||||||||||||||    
T  10022103 cactgctaaaataatgacatttagtaacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggt 10022202  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    |||| ||||||||||||||| |||||| ||||||||||| || |||||    
T  10022203 aaagctcgtgttactaaagaattttagttacattttatattactatct 10022250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 164 - 302
Target Start/End: Complemental strand, 26225099 - 26224961
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| || ||||||||||||| |||||| |||||||| ||||||    
T  26225099 cactactacaataatgacatttaataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggt 26225000  T
Q  264 aaagttcgtgttactaaagagttttagctacattttata 302  Q
    ||||   |||||||||||||||||||| | |||||||||    
T  26224999 aaagccggtgttactaaagagttttagtttcattttata 26224961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 164 - 305
Target Start/End: Complemental strand, 26205536 - 26205395
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| |||||||||||| ||||||| ||| ||||||||| ||||||||||||||||||||||| ||||||||||||| |||||| ||| ||||| |||||    
T  26205536 cactactacaataatgacatttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggt 26205437  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagta 305  Q
    |||| | |||||||||||||||||||| | ||||| ||||||    
T  26205436 aaagctggtgttactaaagagttttagtttcatttgatagta 26205395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 185 - 311
Target Start/End: Complemental strand, 20277460 - 20277334
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| | |||||||||||||||||||| |||||| ||| ||||||||||||| |||| |  ||||||||||||||||||  | |||||||||||||    
T  20277460 tagtaacactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaagcacctgttactaaagag 20277361  T
Q  285 ttttagctacattttatagtattatct 311  Q
     ||||| |||||| |||||||||||||    
T  20277360 ctttagttacattatatagtattatct 20277334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 185 - 311
Target Start/End: Complemental strand, 26621191 - 26621065
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| ||||||||||| ||||||| ||||||||||||| | |||||||||||||||| |  |||||||||||| ||||   | |||||||||||||    
T  26621191 tagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaaagccatgttactaaagag 26621092  T
Q  285 ttttagctacattttatagtattatct 311  Q
     ||||| ||||||||||||||||||||    
T  26621091 ctttagttacattttatagtattatct 26621065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 185 - 309
Target Start/End: Original strand, 30089735 - 30089859
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| ||||||| ||| ||||||||||||||||||||| | |||| |||||| |||| | |||||||||||||| ||||  | |||||||||||||    
T  30089735 tagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttaggaaaagcccatgttactaaagag 30089834  T
Q  285 ttttagctacattttatagtattat 309  Q
     ||||| ||||||||||||||||||    
T  30089835 ctttagttacattttatagtattat 30089859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 185 - 312
Target Start/End: Complemental strand, 26608639 - 26608512
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||||||||||||||| |  |||||||||||||||||| | ||||||||||| |||| | ||||||||||||| |||||  | |||||||||||||    
T  26608639 tagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaagcccatgttactaaagag 26608540  T
Q  285 ttttagctacattttatagtattatcta 312  Q
     ||||| | |||||||||||| ||||||    
T  26608539 ctttagttgcattttatagtactatcta 26608512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 266
Target Start/End: Original strand, 16170249 - 16170352
Alignment:
Q  163 tcacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttagg 262  Q
    ||||| || ||||||||| |||||| |||| |||||||||||||| ||||||  |||| ||||| ||||||||||||| ||||||  |||||||||||||    
T  16170249 tcactactgcaataatgacatttagcaacacttgaaaattgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttagg 16170348  T
Q  263 taaa 266  Q
    ||||    
T  16170349 taaa 16170352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 185 - 309
Target Start/End: Complemental strand, 26619202 - 26619080
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| |||||| |||| ||||||||||||||||||||| | ||||||||||  |||| | ||||||||| ||||||||     ||||||||||||     
T  26619202 tagtaacacttgaaa-ttgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggtaaatcctatgttactaaagaa 26619105  T
Q  285 ttttagctacattttatagtattat 309  Q
     ||||| ||||||| ||||||||||    
T  26619104 ctttagttacatttgatagtattat 26619080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 281
Target Start/End: Original strand, 3234324 - 3234424
Alignment:
Q  182 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaa-ttgttaggtaaagttcgtgttactaa 280  Q
    ||||||||||| ||||||| ||||||||||| || ||||||| || ||| | ||||||| |||| | || ||| || ||||||||||| |||||||||||    
T  3234324 atttagtaacagttgaaaaatgtaactaaataaaaaaaaatggtactaaattaatttagtaacatttgaccaatttattaggtaaagtccgtgttactaa 3234423  T
Q  281 a 281  Q
    |    
T  3234424 a 3234424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 309
Target Start/End: Original strand, 16086501 - 16086611
Alignment:
Q  199 aattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagagttttagctacattt 298  Q
    |||||| | |||||||  |||| ||||| ||||||||||||  |||| | ||| ||||||||||||||| || ||||||| || || || ||  ||||||    
T  16086501 aattgttattaaatcagaaaaactgttactaattaaatttaataacatttgaataattgttaggtaaagctcatgttacttaatagcttcagtaacattt 16086600  T
Q  299 tatagtattat 309  Q
    |||||||||||    
T  16086601 tatagtattat 16086611  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 14803160 - 14803120
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgtt 225  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  14803160 tagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 14803120  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 15250154 - 15250114
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgtt 225  Q
    |||||||  ||||||| ||||||||||||||||||||||||    
T  15250154 tagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 15250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 164 - 311
Target Start/End: Original strand, 6678 - 6825
Alignment:
Q  164 cacttctacaataatgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggt 263  Q
    |||| ||||||||||| || ||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||    
T  6678 cactactacaataatggtaattagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggt 6777  T
Q  264 aaagttcgtgttactaaagagttttagctacattttatagtattatct 311  Q
    ||||   |||||||||||  ||||||| |||||||||||||| |||||    
T  6778 aaagccggtgttactaaaatgttttagttacattttatagtactatct 6825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 305
Target Start/End: Complemental strand, 446383 - 446263
Alignment:
Q  185 tagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacactcgaacaattgttaggtaaagttcgtgttactaaagag 284  Q
    |||||||| | ||| |||||||||||||||   ||| |||||  |||||||||| | |||| | |||||||||||||| ||||| | | |||||||||||    
T  446383 tagtaacaatcgaagattgtaactaaatcatacaaattgttaccaattaaatttggtaacatttgaacaattgttaggaaaagtccatattactaaagag 446284  T
Q  285 ttttagctacattttatagta 305  Q
     |||||  ||| |||||||||    
T  446283 ctttagtaacactttatagta 446263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1005 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 226
Target Start/End: Original strand, 640 - 689
Alignment:
Q  177 atgatatttagtaacatttgaaaattgtaactaaatcaagaaaaatgtta 226  Q
    |||| ||||||||||| || |||||||||||||||| || ||||||||||    
T  640 atgaaatttagtaacacttaaaaattgtaactaaataaaaaaaaatgtta 689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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