View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_low_18 (Length: 299)

Name: NF5275_low_18
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_low_18
NF5275_low_18
[»] chr6 (6 HSPs)
chr6 (14-293)||(32671204-32671481)
chr6 (60-128)||(21403253-21403320)
chr6 (166-217)||(21403342-21403393)
chr6 (60-128)||(29122869-29122937)
chr6 (84-130)||(8091628-8091674)
chr6 (67-128)||(8084612-8084673)
[»] scaffold0330 (2 HSPs)
scaffold0330 (60-128)||(14835-14904)
scaffold0330 (166-208)||(14926-14968)
[»] scaffold0240 (2 HSPs)
scaffold0240 (166-214)||(11300-11348)
scaffold0240 (22-87)||(11225-11290)
[»] chr8 (1 HSPs)
chr8 (63-101)||(2805042-2805080)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 14 - 293
Target Start/End: Original strand, 32671204 - 32671481
Alignment:
Q  14 caacacatgctaaagagcttttaattcaaaatttactgtgcatggaaatttaatatttccatattcagcttcatccaatttaatatttctcatctacttt 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32671204 caacacatgctaaagagcttttaattcaaaatttactgtgcatggaaatttaatatttccatattcagcttcatccaatttaatatttctcatctacttt 32671303  T
Q  114 ttccctttttccattttgtcctnnnnnnnnnttaaagaaaagtaaaatgaatagactgcaggaaggaaccataaccaaacaagcacgtctattttctgca 213  Q
    ||||||||||||||||||||||         |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32671304 ttccctttttccattttgtcctaaaaaaaaattaaagaaaagt-aaatgaagagactgcaggaaggaaccataaccaaacaagcacgcctattttctgca 32671402  T
Q  214 ggcatgcaggaatcttttgaaggtatatgaaaaatataaatgaagataacaaatgttgtaacctaaaacagaattatgta 293  Q
    |||||||||||||| |||  |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||    
T  32671403 ggcatgcaggaatc-tttacaggtatatgaaaaatataaatgaacataacaaatgttgtaacctaaaacaaaatgatgta 32671481  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 21403253 - 21403320
Alignment:
Q  60 aatttaatatttccatattcagcttcatccaatttaatatttctcatctactttttccctttttccatt 128  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  21403253 aatttaatatttcc-tattcagcttcatccaatttaatatttctcatctaatttttcccttttttcatt 21403320  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 217
Target Start/End: Original strand, 21403342 - 21403393
Alignment:
Q  166 agactgcaggaaggaaccataaccaaacaagcacgtctattttctgcaggca 217  Q
    ||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  21403342 agactgcaggaaggaaccataaccaaacaagcacacctattttatgcaggca 21403393  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 29122937 - 29122869
Alignment:
Q  60 aatttaatatttccatattcagcttcatccaatttaatatttctcatctactttttccctttttccatt 128  Q
    |||||||||||||| | ||||||| ||||||||||| || ||||||| ||| |||| || |||||||||    
T  29122937 aatttaatatttcctttttcagctccatccaatttattaattctcatttacctttttcccttttccatt 29122869  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 8091674 - 8091628
Alignment:
Q  84 tcatccaatttaatatttctcatctactttttccctttttccatttt 130  Q
    |||||||||||||| ||||| || ||||||||| |||||||||||||    
T  8091674 tcatccaatttaatctttcttatttactttttctctttttccatttt 8091628  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 8084673 - 8084612
Alignment:
Q  67 tatttccatattcagcttcatccaatttaatatttctcatctactttttccctttttccatt 128  Q
    ||||||||| ||||   |||||||||||||| ||||||||  |||||||| |||||||||||    
T  8084673 tatttccattttcaaaatcatccaatttaatctttctcattcactttttctctttttccatt 8084612  T

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Target: scaffold0330 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 60 - 128
Target Start/End: Original strand, 14835 - 14904
Alignment:
Q  60 aatttaatatttccatattcagcttcatccaatttaatatttctcatctactttttcc-ctttttccatt 128  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||    
T  14835 aatttaatatttccatattcaccttcatcaaatttaatatttctcatccactttttccgctttttccatt 14904  T

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Target: scaffold0330; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 14926 - 14968
Alignment:
Q  166 agactgcaggaaggaaccataaccaaacaagcacgtctatttt 208  Q
    ||||||||||||||||||||||||||| ||||||| |||||||    
T  14926 agactgcaggaaggaaccataaccaaataagcacgcctatttt 14968  T

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Target: scaffold0240 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 214
Target Start/End: Original strand, 11300 - 11348
Alignment:
Q  166 agactgcaggaaggaaccataaccaaacaagcacgtctattttctgcag 214  Q
    |||||||||||| |||||||||||||||||||||| ||||||| |||||    
T  11300 agactgcaggaaagaaccataaccaaacaagcacgcctattttatgcag 11348  T

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Target: scaffold0240; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 11225 - 11290
Alignment:
Q  22 gctaaagagcttttaattcaaaatttactgtgcatggaaatttaatatttccatattcagcttcat 87  Q
    |||||||||| |||||||  |||||||  |||||||| ||| || |||||||||||||| ||||||    
T  11225 gctaaagagcctttaattgcaaatttatagtgcatggcaatgtagtatttccatattcaacttcat 11290  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 2805042 - 2805080
Alignment:
Q  63 ttaatatttccatattcagcttcatccaatttaatattt 101  Q
    |||||||||||||||| ||||||||| ||||||||||||    
T  2805042 ttaatatttccatatttagcttcatctaatttaatattt 2805080  T

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