View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_19 (Length: 296)
Name: NF5275_low_19
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 275
Target Start/End: Complemental strand, 37108521 - 37108259
Alignment:
| Q |
13 |
agcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagca |
112 |
Q |
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| T |
37108521 |
agcaaagggtggttcaccaaaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagca |
37108422 |
T |
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| Q |
113 |
tttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgttgctattggatctttcc |
212 |
Q |
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| T |
37108421 |
tttgatgcagctatccatgatggtgttgatgtcttgtctgtgtcacttggtggctctgcttctaaccttttcaatgatagtgttgctattggatctttcc |
37108322 |
T |
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| Q |
213 |
atgctgctaagaaaggtattgttgttgtttgctctgctggcaatgatggaccaaaggatgcta |
275 |
Q |
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| T |
37108321 |
atgctgctaagaaaggtattgttgttgtttgctctgctggcaatagtggaccaaatgatgcta |
37108259 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 144
Target Start/End: Original strand, 39188767 - 39188879
Alignment:
| Q |
32 |
aaagcaagagttgcatcatacaaagtttgttggcctccaattaatggcgacgagtgctttgatgcagacatacttgcagcatttgatgcagctatccatg |
131 |
Q |
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|||||||||||||| | |||||||| || ||||| |||||| ||||| ||| ||||||||||| || || | ||||| |||||| ||||| |||| |
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| T |
39188767 |
aaagcaagagttgctgcttacaaagtctgctggccaccaattgatggcagcgaatgctttgatgctgatatcatggcagcctttgatatggctattcatg |
39188866 |
T |
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| Q |
132 |
atggtgttgatgt |
144 |
Q |
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| T |
39188867 |
atggggttgatgt |
39188879 |
T |
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