View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_low_2 (Length: 516)

Name: NF5275_low_2
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_low_2
NF5275_low_2
[»] chr6 (13 HSPs)
chr6 (17-505)||(5692436-5692926)
chr6 (332-505)||(5174244-5174417)
chr6 (366-505)||(5275990-5276129)
chr6 (300-434)||(5276130-5276264)
chr6 (312-511)||(5380461-5380663)
chr6 (429-511)||(5107707-5107789)
chr6 (395-490)||(5149595-5149690)
chr6 (20-119)||(5356836-5356935)
chr6 (395-506)||(5093035-5093146)
chr6 (395-506)||(5160391-5160502)
chr6 (402-481)||(5340679-5340758)
chr6 (20-119)||(5423436-5423535)
chr6 (43-120)||(5341382-5341459)
[»] chr4 (2 HSPs)
chr4 (17-118)||(25567613-25567714)
chr4 (48-120)||(4342630-4342702)


Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 17 - 505
Target Start/End: Original strand, 5692436 - 5692926
Alignment:
Q  17 aggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatcttttatagcctcactttcgttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692436 aggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatcttttatagcctcactttcgttc 5692535  T
Q  117 ctatttcaaaaacaaccaaaagagaggattaatgattggataagaaannnnnnn--tcnnnnnnnattgcaaaatggggcaaagttagaggacaaaaatg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||          ||       |||||||||||||||||||||||||||||||||||    
T  5692536 ctatttcaaaaacaaccaaaagagaggattaatgattggataagaacccccccccctctttttttattgcaaaatggggcaaagttagaggacaaaaatg 5692635  T
Q  215 ttgttttattaatcgggggcaaaattataattttaacaaatttagggaaccaaaaatgagtttaagcctctgaatgattgcaatagttgaatgaaactac 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692636 ttgttttattaatcgggggcaaaattataattttaacaaatttagggaaccaaaaatgagtttaagcctctgaatgattgcaatagttgaatgaaactac 5692735  T
Q  315 ctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttctttgaaattctgctcaaga 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5692736 ctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttctttgaaattctgctcaaga 5692835  T
Q  415 gactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctat 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5692836 gactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgccctat 5692926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 332 - 505
Target Start/End: Complemental strand, 5174417 - 5174244
Alignment:
Q  332 aaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgctttt 431  Q
    ||||||||||||| ||||| |||||| ||| || |||||||||||||| ||| ||  | |||||||||||||||||||||||||||||||||||||||||    
T  5174417 aaagccagcaagctcagcagcctcacgaagtgcatctctccatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgctttt 5174318  T
Q  432 ccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctat 505  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  5174317 ccaaactcacctgtttggtgtcgtacatccgaaggatcaacatcatagaacaccggcaacactatctgccctat 5174244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 366 - 505
Target Start/End: Complemental strand, 5276129 - 5275990
Alignment:
Q  366 tctctccatttcagcgacttgtctgtcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaag 465  Q
    |||||| ||||||| ||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5276129 tctctcaatttcagggacgtgcttttcttctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaag 5276030  T
Q  466 gatcaacatcatagaacaccggcaacactatctgtcctat 505  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  5276029 gatcaacatcatagaacaccggcaacactatctgccctat 5275990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 300 - 434
Target Start/End: Complemental strand, 5276264 - 5276130
Alignment:
Q  300 gttgaatgaaactacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttctttg 399  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||| ||| || |||||||||||||| ||  ||  | ||||||||     
T  5276264 gttgaattaaattacctgaaatttggaactacaaagccagcaatctcagcaacctcacgaagtgcatctctccatttcagggatgtgcttttcttcttta 5276165  T
Q  400 aaattctgctcaagagactttggaacgcttttcca 434  Q
    |||||||||||||||||||||||||||||||||||    
T  5276164 aaattctgctcaagagactttggaacgcttttcca 5276130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 312 - 511
Target Start/End: Complemental strand, 5380663 - 5380461
Alignment:
Q  312 tacctgaaatttggaactacaaagccagcaagcccagcaacctcactaagcgcgtctctccatttcagcgacttgtctgtcttcttt---gaaattctgc 408  Q
    |||||| | ||| |||||||||| |||||||   ||||| || ||  ||| || |||||||||||||||| ||| ||| |||||||    |||| | |||    
T  5380663 tacctggagtttagaactacaaatccagcaaaggcagcagccccatgaagagcctctctccatttcagcgtcttatctttcttcttcttcgaaagtttgc 5380564  T
Q  409 tcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctatgct 508  Q
    ||||||||||||  || |||| |||||||||||| |||||||| ||||| ||  | ||||||||||||||||||||||| | |||||||||| ||||| |    
T  5380563 tcaagagactttcaaaagcttgtccaaactcaccagtttggtgacgtacctccaagggatcaacatcatagaacaccggtagcactatctgtgctatggt 5380464  T
Q  509 tct 511  Q
    |||    
T  5380463 tct 5380461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 429 - 511
Target Start/End: Original strand, 5107707 - 5107789
Alignment:
Q  429 tttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacactatctgtcctatgcttct 511  Q
    |||||||||||||| ||||| || ||||| ||||| ||||||||||||||||||||||| | ||| | ||| |||||||||||    
T  5107707 tttccaaactcaccagtttgatgacgtacttctgagggatcaacatcatagaacaccggaagcaccacctgccctatgcttct 5107789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 5149595 - 5149690
Alignment:
Q  395 ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaa 490  Q
    ||||||||||||  ||||||||||||| || ||||| |||||||||| ||||||||| ||||| ||  | ||||| |||||||| ||||| |||||    
T  5149595 ctttgaaattctattcaagagactttgaaatgctttgccaaactcacttgtttggtgacgtacttcacatggatctacatcataaaacactggcaa 5149690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 5356836 - 5356935
Alignment:
Q  20 ttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatcttttatagcctcactttcgttccta 119  Q
    |||||||||||| | || |||||||||||| |||||| ||||||| ||||||||   ||  ||||| |||||||| || ||||| |||||||| ||||||    
T  5356836 ttcaactcccaccggattattagcaacaaataagtctgtcttgtcaagcaaacgtgtaatatttttaacaatatccttgatagcttcactttcattccta 5356935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 506
Target Start/End: Complemental strand, 5093146 - 5093035
Alignment:
Q  395 ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacact 494  Q
    ||||||||||||  | |||||| |||| || ||||| |||||||| ||| | ||||| ||||| || || ||||| ||||| |||||||| ||||  |||    
T  5093146 ctttgaaattctatttaagagattttgaaatgctttaccaaactcgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcacaact 5093047  T
Q  495 atctgtcctatg 506  Q
    ||||| ||||||    
T  5093046 atctgccctatg 5093035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 506
Target Start/End: Original strand, 5160391 - 5160502
Alignment:
Q  395 ctttgaaattctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaacaccggcaacact 494  Q
    ||||||||||||  | |||||| |||| || ||||| |||||||  ||| | ||||| ||||| || || ||||| ||||| |||||||| ||||| |||    
T  5160391 ctttgaaattctatttaagagattttgaaatgctttaccaaacttgcctttctggtgacgtacttcagagggatctacatcgtagaacactggcaaaact 5160490  T
Q  495 atctgtcctatg 506  Q
    ||||| ||||||    
T  5160491 atctgccctatg 5160502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 481
Target Start/End: Complemental strand, 5340758 - 5340679
Alignment:
Q  402 attctgctcaagagactttggaacgcttttccaaactcacctgtttggtgtcgtacatctgaaggatcaacatcatagaa 481  Q
    |||||| |||| ||| |||| || |||||||||||||| |||||||| || ||||  ||||| ||||||||||| |||||    
T  5340758 attctgttcaaaagattttgaaatgcttttccaaactctcctgtttgatgacgtatttctgagggatcaacatcgtagaa 5340679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 5423535 - 5423436
Alignment:
Q  20 ttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatcttttatagcctcactttcgttccta 119  Q
    |||||||||||| | || |||||||| |||||| ||| ||||||| |||  ||||  ||| ||||  |||||||| || |||||||||||||| ||||||    
T  5423535 ttcaactcccacaggattattagcaataaacaaatctgtcttgtcaagcttacgcgtaacattttcaacaatatccttaatagcctcactttcattccta 5423436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 5341459 - 5341382
Alignment:
Q  43 caacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatcttttatagcctcactttcgttcctat 120  Q
    |||||||||||||| ||||||  ||||| |||  |||||||| ||| ||||| || |||||||| ||||| |||||||    
T  5341459 caacaaacaagtctgtcttgttaagcaagcgcgtaactttttcgacgatatccttgatagcctcgctttcattcctat 5341382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 25567714 - 25567613
Alignment:
Q  17 aggttcaactcccactgaatgattagcaacaaacaagtctttcttgtctagcaaacgcacaacttttttgacaatatcttttatagcctcactttcgttc 116  Q
    ||||||||||||||||| || ||||||||||| ||||| | ||||||||||||||||||| | |||||  |||||||| || |||||||||||||| |||    
T  25567714 aggttcaactcccactggattattagcaacaagcaagtgtgtcttgtctagcaaacgcacgattttttcaacaatatccttgatagcctcactttcattc 25567615  T
Q  117 ct 118  Q
    ||    
T  25567614 ct 25567613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Complemental strand, 4342702 - 4342630
Alignment:
Q  48 aacaagtctttcttgtctagcaaacgcacaacttttttgacaatatcttttatagcctcactttcgttcctat 120  Q
    ||||||||| ||||||| |||||||| | ||| ||||  ||||||||||| ||| |||||||||| |||||||    
T  4342702 aacaagtctgtcttgtcaagcaaacgtataacattttcaacaatatctttgataacctcactttcattcctat 4342630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University