View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_22 (Length: 279)
Name: NF5275_low_22
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_22 |
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| [»] scaffold0929 (2 HSPs) |
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Alignment Details
Target: scaffold0929 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 4 - 159
Target Start/End: Original strand, 423 - 578
Alignment:
| Q |
4 |
gagtgagatgaatataaaagggtaagggatgaagacttgtggaagttttagttttatatatattgtgttagcaaaataaattatataatgatatagttct |
103 |
Q |
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| T |
423 |
gagtgacaagaatataaaagggtaagggatgaagacttgtggaagttttagttttatatatattgtgttagcaaaataaattatataatgatataattct |
522 |
T |
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| Q |
104 |
cttgatttggtctagattatggttgagcattgatttttctatctattattaatata |
159 |
Q |
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| T |
523 |
cttgatttggtctagattatggttgagcattgatttttctatctattattaatata |
578 |
T |
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Target: scaffold0929; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 580 - 623
Alignment:
| Q |
208 |
tgtatccctaagattttaccacctgcatggtatataatttgaga |
251 |
Q |
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| T |
580 |
tgtatccctaagattttaccacctgcatggtatataatttgaga |
623 |
T |
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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 6368996 - 6369070
Alignment:
| Q |
13 |
gaatataaaagggtaagggatgaagacttgtggaagttttagttttatatatattgtgttagcaaaataaattata |
88 |
Q |
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| T |
6368996 |
gaatagaaaagggaatgggatgaagacttgtggatattt-agttttatatatattgtgttagcaaaataaattata |
6369070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 6377461 - 6377535
Alignment:
| Q |
13 |
gaatataaaagggtaagggatgaagacttgtggaagttttagttttatatatattgtgttagcaaaataaattata |
88 |
Q |
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| T |
6377461 |
gaatagaaaagggaatgggatgaagacttgtggatattt-agttttatatatattgtgttagcaaaataaattata |
6377535 |
T |
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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 6369471 - 6369521
Alignment:
| Q |
201 |
aaattattgtatccctaagattttaccacctgcatggtatataatttgaga |
251 |
Q |
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| T |
6369471 |
aaattattgtatccctaggattttaccatctgcatggtatagaattagaga |
6369521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 6377936 - 6377986
Alignment:
| Q |
201 |
aaattattgtatccctaagattttaccacctgcatggtatataatttgaga |
251 |
Q |
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| T |
6377936 |
aaattattgtatccctaggattttaccatctgcatggtatagaattagaga |
6377986 |
T |
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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 6369434 - 6369466
Alignment:
| Q |
144 |
atctattattaatatatttgaggttctagagta |
176 |
Q |
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| T |
6369434 |
atctattattaatatatttgaggttctacagta |
6369466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 6377899 - 6377931
Alignment:
| Q |
144 |
atctattattaatatatttgaggttctagagta |
176 |
Q |
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| T |
6377899 |
atctattattaatatatttgaggttctacagta |
6377931 |
T |
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