View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_low_23 (Length: 272)

Name: NF5275_low_23
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_low_23
NF5275_low_23
[»] chr2 (6 HSPs)
chr2 (1-259)||(21019524-21019782)
chr2 (1-206)||(1435775-1435974)
chr2 (38-206)||(1448632-1448797)
chr2 (63-195)||(1441253-1441382)
chr2 (46-206)||(1429207-1429364)
chr2 (38-195)||(1455388-1455542)


Alignment Details
Target: chr2 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 21019782 - 21019524
Alignment:
Q  1 atttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggaca 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21019782 atttcaaaagttccagtttcaaactaataaaaccgcgactatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggaca 21019683  T
Q  101 atgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaa 200  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21019682 atgcggaagaatattgcagtgggatctgccagggggattgcttacttgcattatagttatgaccctcctaagattattcaccgtgatgtgaaagctgcaa 21019583  T
Q  201 acatatattttttataatagcaaatattattaatgcatccaaaactctcaagaagagaa 259  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  21019582 acatattttttttttaatagcaaatattattaatgcatccaaaactctcaagaagagaa 21019524  T

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Target: chr2; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 1435775 - 1435974
Alignment:
Q  1 atttcaaaagttccagtttcaaactaataaaaccgcgtctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggaca 100  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||    
T  1435775 atttcaaaagttccagtttcaaactaa---aaccgcgtctatgtatattgattctgttgttgtagaacgtaatggctctcaacctccgcttgagtggcca 1435871  T
Q  101 atgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaa 200  Q
    |||| ||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||    
T  1435872 atgcggaaaaatattgcgttgggatctgccagggggattgcttacttgcattatagttgtgac---cctaagattattcaccgtgatgtgaaagctgcaa 1435968  T

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Target: chr2; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 38 - 206
Target Start/End: Original strand, 1448632 - 1448797
Alignment:
Q  38 tctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccaggggga 137  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||| || ||| |||||||||||     
T  1448632 tctatgtatattgattgtgtttttgtagaacgtaatgactctcaaccgccgcttgactggccaatgcggaagaatattgcgctaggagctgccagggggc 1448731  T
Q  138 ttgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaaacatat 206  Q
    |||||||||||||| ||  |||||||   |||||||||||||| |||||||||||||||||||| ||||    
T  1448732 ttgcttacttgcatgatcattgtgac---cctaagattattcatcgtgatgtgaaagctgcaaatatat 1448797  T

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Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 195
Target Start/End: Original strand, 1441253 - 1441382
Alignment:
Q  63 tagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttacttgcattatagttgtga 162  Q
    ||||||||||||||||||| || |||||||| ||| |||||| |||||||||||| |||||| ||||||||||| |||||||||||||| ||  ||||||    
T  1441253 tagaacgtaatgactctcagccgccgcttgagtggccaatgcggaagaatattgcgctgggagctgccagggggcttgcttacttgcatgatcattgtga 1441352  T
Q  163 ccctcctaagattattcaccgtgatgtgaaagc 195  Q
    |   |||||||||||||| ||||||||||||||    
T  1441353 c---cctaagattattcatcgtgatgtgaaagc 1441382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 46 - 206
Target Start/End: Original strand, 1429207 - 1429364
Alignment:
Q  46 tattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccagggggattgcttac 145  Q
    |||||||| || ||||||||||||||| ||   | | || |||||||| ||| |||||| ||||||||||||||||||||||||||| ||| ||||||||    
T  1429207 tattgattttgatgttgtagaacgtaacgaggttgatccgccgcttgagtggccaatgcggaagaatattgcactgggatctgccagagggcttgcttac 1429306  T
Q  146 ttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagctgcaaacatat 206  Q
    |||||| ||   ||||||   |||||||||||||| |||||||||||||||||||| ||||    
T  1429307 ttgcatgatcactgtgac---cctaagattattcatcgtgatgtgaaagctgcaaatatat 1429364  T

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Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 195
Target Start/End: Original strand, 1455388 - 1455542
Alignment:
Q  38 tctatgtatattgattctgttgttgtagaacgtaatgactctcaacctccgcttgactggacaatgccgaagaatattgcactgggatctgccaggggga 137  Q
    ||||||||||||  || |||||||||||||||||||| ||||||||| || ||||| ||| |||||  |||||||||||  |||||| |||||| ||||     
T  1455388 tctatgtatattctttttgttgttgtagaacgtaatgcctctcaaccgccacttgattggccaatgaggaagaatattgggctgggagctgccaaggggc 1455487  T
Q  138 ttgcttacttgcattatagttgtgaccctcctaagattattcaccgtgatgtgaaagc 195  Q
    | |||||||||||| ||  ||||||   ||||||| ||||||| ||||||||||||||    
T  1455488 tggcttacttgcatgatcattgtga---tcctaaggttattcatcgtgatgtgaaagc 1455542  T

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