View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_27 (Length: 251)
Name: NF5275_low_27
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 32882470 - 32882712
Alignment:
| Q |
1 |
ccacattcccctcttcgtttcctcaaaatcctcgaaactcatcatcaacgattccttcactcacaccatgattcaccatcacaagcttcgttcatccaaa |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32882470 |
ccacattcccctcttagtttcctcaaaatcctcgaaactcatcatcaacgattccttcactcacaccatgattcaccatcacaagcttcgttaatccaaa |
32882569 |
T |
|
| Q |
101 |
accttctcaaattccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttgtcctccaagtttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
32882570 |
accttctcaaattccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccaacaacaaccttgtcctcaaagtttt |
32882669 |
T |
|
| Q |
201 |
gcaacggcatcgttccgattggaaaccagcgtttatattcttc |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
32882670 |
acaacggcatcgttccgattggaaaccagcgtttatattcttc |
32882712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25711832 - 25711591
Alignment:
| Q |
1 |
ccacattcccctcttcgtttcctcaaaatcctcgaaactcatcatcaacgattccttcactcacaccatgattcaccatcacaagcttcgttcatccaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||| |
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| T |
25711832 |
ccacattcccctcttcgtttcctcaaaatcctcgaaactcatcatca-cgattccttcactcacaccatgattcaccaccactagcttcgttcatccaaa |
25711734 |
T |
|
| Q |
101 |
accttctcaaattccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttgtcctccaagtttt |
200 |
Q |
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| T |
25711733 |
accttctcaaattccgcagagacaaacccacagaacaaatcgaacaagctcttaacctcattggaattcaccccaacaacaaccttgtcctccaagtttt |
25711634 |
T |
|
| Q |
201 |
gcaacggcatcgttccgattggaaaccagcgtttatattcttc |
243 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25711633 |
gcaacggcatcgttccgattggaaaccagcgtttatattcttc |
25711591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 28087508 - 28087376
Alignment:
| Q |
111 |
attccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttgtcctccaagttttgcaacggcat |
210 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| || ||||||| |||||| |||||| || |||||||||||||| |
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|
| T |
28087508 |
attccgcagagataaacccacagaacaaatcgaacgagctcttaatctcaccggaatccatcccgacagcaacctcgtcctcgaacttttgcaacggcat |
28087409 |
T |
|
| Q |
211 |
cgttccgattggaaaccagcgtttatattcttc |
243 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |
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| T |
28087408 |
cggtccgattggaaaccagcgtttatattcttc |
28087376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 110 - 242
Target Start/End: Complemental strand, 35480588 - 35480457
Alignment:
| Q |
110 |
aattccgcagagacaaacccacagaacaaatcgaacgagctcttaacctcactggaattcaccccgacaacaaccttgtcctccaagttttgcaacggca |
209 |
Q |
| |
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||||| ||||||||||||||| ||||||| | ||||||||| |||| ||||||||||| |||||||||| |||||| |||||| ||||||||||||| || |
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| T |
35480588 |
aattctgcagagacaaacccaaagaacaatt-gaacgagcttttaatctcactggaatccaccccgacagcaacctcgtcctcgaagttttgcaacgaca |
35480490 |
T |
|
| Q |
210 |
tcgttccgattggaaaccagcgtttatattctt |
242 |
Q |
| |
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||| ||| |||| |||||||||||||||||||| |
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|
| T |
35480489 |
tcgatccaattgaaaaccagcgtttatattctt |
35480457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 112
Target Start/End: Complemental strand, 26723457 - 26723425
Alignment:
| Q |
80 |
cacaagcttcgttcatccaaaaccttctcaaat |
112 |
Q |
| |
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|||||||||| |||||||||||||||||||||| |
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| T |
26723457 |
cacaagcttcattcatccaaaaccttctcaaat |
26723425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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