View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_low_28 (Length: 251)

Name: NF5275_low_28
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_low_28
NF5275_low_28
[»] chr5 (3 HSPs)
chr5 (131-220)||(29770517-29770606)
chr5 (1-71)||(29770390-29770460)
chr5 (204-240)||(29770624-29770660)


Alignment Details
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 29770517 - 29770606
Alignment:
Q  131 aacacccattaccctctaatttatatgatttcatctttgtctttattacaatttatcgtaggattaactaacataagcctgagattaatt 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29770517 aacacccattaccctctaatttatatgatttcatctttgtctttattacaatttatcgtaggattaactaacataagcctgagattaatt 29770606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 29770390 - 29770460
Alignment:
Q  1 attgaaggacaagaggctattctatgagtggcgtgttggtcttgttgattgtttgtgtaggagtagcattc 71  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29770390 attgaaggacaagaggctattctatgagtggtgtgttggtcttgttgattgtttgtgtaggagtagcattc 29770460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 204 - 240
Target Start/End: Original strand, 29770624 - 29770660
Alignment:
Q  204 taagcctgagattaattgtatcctctcctctacctat 240  Q
    ||||||||||||||||||||||||||| |||||||||    
T  29770624 taagcctgagattaattgtatcctctcttctacctat 29770660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University