View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5275_low_32 (Length: 240)
Name: NF5275_low_32
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_32 |
 | |
|
| [»] scaffold0929 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0929 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 88 - 228
Target Start/End: Original strand, 828 - 968
Alignment:
| Q |
88 |
cataccacttaatatgttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattc |
187 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
828 |
cataccacttaatatgttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagtttctctattc |
927 |
T |
|
| Q |
188 |
cacaagtccaattgtaatgtgtggcataacataataattga |
228 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
928 |
cacaagtccaattgtaatgtgtggcataacataataattga |
968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 6369889 - 6370012
Alignment:
| Q |
105 |
tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattccacaagtccaattgtaa |
204 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||| |||||||||||| |||||| ||||||| |||||| || |
|
|
| T |
6369889 |
tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagttcttctattgcacaagttcaattgaaa |
6369988 |
T |
|
| Q |
205 |
tgtgtggcataacataataattga |
228 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
6369989 |
tgtgtggcatagcataataattga |
6370012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 105 - 228
Target Start/End: Original strand, 6378354 - 6378477
Alignment:
| Q |
105 |
tttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaaacaagagttcctctattccacaagtccaattgtaa |
204 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||| | ||||||| |||||||||||| |||||| ||||||| |||||| || |
|
|
| T |
6378354 |
tttcttttaatttctatcatttatatgtatgtgtcaaaataaattttatttgagattgtgttcaaacaagagttcttctattgcacaagttcaattgaaa |
6378453 |
T |
|
| Q |
205 |
tgtgtggcataacataataattga |
228 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
6378454 |
tgtgtggcatagcataataattga |
6378477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 34514802 - 34514867
Alignment:
| Q |
104 |
ttttcttttaatttctattatttatgtgtatgtgtcaaaataaattttatttagggttgtgtttaa |
169 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| | ||||||||||||||| | ||| ||||||| |
|
|
| T |
34514802 |
ttttcttttaattttttatatttatgtgtatgtccccaaataaattttatttggagttatgtttaa |
34514867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University