View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_35 (Length: 239)
Name: NF5275_low_35
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 11 - 160
Target Start/End: Complemental strand, 5498143 - 5497993
Alignment:
| Q |
11 |
atgaatgcagcggttag-gtcaagtgtctccagccgttggatttgacaatgcattttctgatcaagtttatactaaacagctcattcaccagcctataca |
109 |
Q |
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| T |
5498143 |
atgaatgcagcggttagagtcaagtgtctccagccgttggatttgacaatgcattttctgatcaagtttatactaaacagctcattcaccagcctataca |
5498044 |
T |
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| Q |
110 |
atgtgtagtactagtaaagttcaatatttaatatgcaaccgaaactataca |
160 |
Q |
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| T |
5498043 |
atgtgtagtactagtaaagttcaatatttaatatgcaaccgaaactataca |
5497993 |
T |
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