View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_4 (Length: 448)
Name: NF5275_low_4
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 445
Target Start/End: Original strand, 54714449 - 54714881
Alignment:
| Q |
18 |
gatgatcacaaaaggataaacaaattggtgatctactattgtttcaatattaataaattatgtggtaaatataacagctattgttcaaggtacactaaaa |
117 |
Q |
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| T |
54714449 |
gatgatcacaaaaggataaacaaattggtgatctactattgtttcaatattaataagttatgtggtaaatataacagctattgttcaaggtacactaaaa |
54714548 |
T |
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| Q |
118 |
tatgtaataacattggtcgcgattccattgtggctaaaagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgtt |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54714549 |
tatgtaataacattggtcgtgattccattgtggctaaaagcggtaaccctaacgctgaaatccttccatgatcagagattgcggccatggtttgtgtgtt |
54714648 |
T |
|
| Q |
218 |
atttatatctatc--------tatatacgtatcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtg |
309 |
Q |
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| T |
54714649 |
atttatatctatctatctatatatatatatatcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtg |
54714748 |
T |
|
| Q |
310 |
atttgttggtttgatgcatgcatgtcaaccattccatactcgatttgagaccatgcaatgtgaaggaatatcacaactatgattgtgaactgaaagtata |
409 |
Q |
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| T |
54714749 |
atttgttggtttgatgcgtgcatgtcaaccattccatactcgatttgagaccaggcaatgtgaagg---atcacagctatgattgtgaactgaaagtata |
54714845 |
T |
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| Q |
410 |
tatattgattgaaataaattcacatgcttgtttctt |
445 |
Q |
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| T |
54714846 |
tatattgattgaaataaattcacatgcttgtttctt |
54714881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 236 - 445
Target Start/End: Original strand, 54680649 - 54680857
Alignment:
| Q |
236 |
acgtatcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgc--atg |
333 |
Q |
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| T |
54680649 |
acgtatcaaatcaaataaatgtatttatgtgagatgatattgatatctgtatccatttaccggattctcgagtgatttgttggtttgatgcatgcatatg |
54680748 |
T |
|
| Q |
334 |
tcaaccattccatactcgatttgagaccatgcaatgtgaaggaatatcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcaca |
433 |
Q |
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| T |
54680749 |
tcaatcattccatactcgatttgagaccatgcaatgtgaagg---atcacaactatgattgtgaactgaaagtatatatattgattgaaataaattcaca |
54680845 |
T |
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| Q |
434 |
tgcttgtttctt |
445 |
Q |
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| T |
54680846 |
tgcttgtttctt |
54680857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 141 - 376
Target Start/End: Original strand, 54721516 - 54721740
Alignment:
| Q |
141 |
tccattgtggctaaaagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttatatctatctatatacgta |
240 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
54721516 |
tccattgtggctaagagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgt- |
54721614 |
T |
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| Q |
241 |
tcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgcatgtcaacca |
340 |
Q |
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| T |
54721615 |
----atcaaataaatgtgtgtatgtgtga------tgatatctgtattttattgccggattctcgagtaatttg-tggtttgatgcacgcatgtcaacca |
54721703 |
T |
|
| Q |
341 |
-ttccatactcgatttgagaccatgcaatgtgaagga |
376 |
Q |
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|||||||||||||| || |||| ||| ||||||||| |
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| T |
54721704 |
tttccatactcgattcgaaaccaggcattgtgaagga |
54721740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 118; Significance: 5e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 141 - 376
Target Start/End: Original strand, 5297669 - 5297893
Alignment:
| Q |
141 |
tccattgtggctaaaagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttatatctatctatatacgta |
240 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
5297669 |
tccattgtggctaagagcggtaaccctaacgctgaaatccttccttgatcagagattgcggccatggtttgtgtgttatttttatctatctatatatgt- |
5297767 |
T |
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| Q |
241 |
tcaaatcaaataaatgtgtttatgtgagatgatattgatatctgtatccatttgccggattctcgagtgatttgttggtttgatgcatgcatgtcaacca |
340 |
Q |
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| T |
5297768 |
----atcaaataaatgtgtgtatgtgtga------tgatatctgtactttattgccggattctcgagtaatttg-tggtttgatgcatgcatgtcaacca |
5297856 |
T |
|
| Q |
341 |
-ttccatactcgatttgagaccatgcaatgtgaagga |
376 |
Q |
| |
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||| ||||||||||||| |||| ||| ||||||||| |
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| T |
5297857 |
tttcgatactcgatttgaaaccaggcattgtgaagga |
5297893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 5398845 - 5398892
Alignment:
| Q |
173 |
tgaaatccttccttgatcagagattgcggccatggtttgtgtgttatt |
220 |
Q |
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| T |
5398845 |
tgaaatccttccatgatgagagattgtggccatggtttgtgtgttatt |
5398892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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