View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5275_low_41 (Length: 216)
Name: NF5275_low_41
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_41 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 11584778 - 11584584
Alignment:
| Q |
1 |
tgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgctttgtataaggggatacacaggtt |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11584778 |
tgtttaccgtaccctggagtcttgttttggcaattgagggagccatgttggtgcgtcacttatcaactaaagtcgctttgtataaggggatacacaggtg |
11584679 |
T |
|
| Q |
101 |
gtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgttcatgggtt |
195 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
11584678 |
gtgagtttgaagttgaatttgttaagtacttaatattaaatggcggagttttggagaagatttctatttggtttttggaagattgttcatgggtt |
11584584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 30373685 - 30373876
Alignment:
| Q |
1 |
tgtttaccgtatcctggagtcttgttttggcaattgagggagccgtgttggtgcgtcacttatcaactaaagtcgctttgtataaggggatacacaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| ||| |||| |||| ||| ||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
30373685 |
tgtttaccgtatcctggagtcttgttttgggaaaaaagggagccatgtcggtgtgtcatttaccaactaaagtctctttgtataaggggatatacaggtg |
30373784 |
T |
|
| Q |
101 |
gtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgttcatgg |
192 |
Q |
| |
|
| ||||||||| ||||||||| || |||||||||||||| || |||||| | ||||| ||| | ||||||||| ||||||||| |||||| |
|
|
| T |
30373785 |
gagagtttgaatatgaatttgttaagtacttaatattaaacggtggagttatagagaatattacactttggtttttggatgattgctcatgg |
30373876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 193
Target Start/End: Original strand, 29965088 - 29965202
Alignment:
| Q |
79 |
tgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcgg |
178 |
Q |
| |
|
||||||| |||||||| |||| | ||||||||| |||| || || || |||||||||||||||||||||||| |||| || ||| | |||||||||| || |
|
|
| T |
29965088 |
tgtataaagggatacaaaggtggagagtttgaatttgagttcgtgaagtacttaatattaaatggcggagttatggataatattaccatttggtttttgg |
29965187 |
T |
|
| Q |
179 |
atgattgttcatggg |
193 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
29965188 |
atgactgttcatggg |
29965202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 182
Target Start/End: Complemental strand, 29785867 - 29785752
Alignment:
| Q |
67 |
ctaaagtcgctttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttcta |
166 |
Q |
| |
|
|||||||| ||||||||| |||||||| |||| | ||||||||| |||| || || || |||||| ||||||||||||||||| |||| || ||| | | |
|
|
| T |
29785867 |
ctaaagtctgtttgtataaagggatacaaaggtggagagtttgaatttgagttcgttaagtacttagtattaaatggcggagttatggataatattacca |
29785768 |
T |
|
| Q |
167 |
tttggttttcggatga |
182 |
Q |
| |
|
||||||||| |||||| |
|
|
| T |
29785767 |
tttggtttttggatga |
29785752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 29839136 - 29839252
Alignment:
| Q |
77 |
tttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttc |
176 |
Q |
| |
|
||||||| | ||||| || |||| | ||||||||| |||||||||| || ||||||||||||||||| |||||| || | || ||| | |||||||||| |
|
|
| T |
29839136 |
tttgtatgaagggatgcaaaggtggagagtttgaacttgaatttgttaagtacttaatattaaatggaggagttatgaataatattacaatttggttttt |
29839235 |
T |
|
| Q |
177 |
ggatgattgttcatggg |
193 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
29839236 |
agatgactgctcatggg |
29839252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 29857222 - 29857119
Alignment:
| Q |
90 |
atacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaaatggcggagttttggagaagatttctatttggttttcggatgattgttca |
189 |
Q |
| |
|
||||| |||| | ||||||||| ||||||||| || ||||||||||||||||| |||||| || | || ||| | |||||||||| |||||| || ||| |
|
|
| T |
29857222 |
atacaaaggtggagagtttgaaattgaatttgctaagtacttaatattaaatggaggagttatgaataatattacaatttggtttttggatgactgctca |
29857123 |
T |
|
| Q |
190 |
tggg |
193 |
Q |
| |
|
|||| |
|
|
| T |
29857122 |
tggg |
29857119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 29857215 - 29857278
Alignment:
| Q |
76 |
ctttgtataaggggatacacaggttgtgagtttgaagttgaatttgtcaaatacttaatattaa |
139 |
Q |
| |
|
|||||||||| |||||||| |||| | ||||||||| ||||||||| || ||||||||||||| |
|
|
| T |
29857215 |
ctttgtataaagggatacaaaggtggagagtttgaaattgaatttggtaagtacttaatattaa |
29857278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University