View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5275_low_42 (Length: 215)

Name: NF5275_low_42
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5275_low_42
NF5275_low_42
[»] chr7 (9 HSPs)
chr7 (1-157)||(28549837-28549993)
chr7 (13-160)||(28545434-28545581)
chr7 (74-156)||(28556078-28556160)
chr7 (75-156)||(48253855-48253936)
chr7 (76-156)||(47958503-47958583)
chr7 (73-156)||(24142889-24142972)
chr7 (83-148)||(42617411-42617475)
chr7 (82-147)||(2415882-2415947)
chr7 (103-148)||(46961385-46961430)
[»] chr3 (4 HSPs)
chr3 (44-156)||(21127734-21127846)
chr3 (73-156)||(43291863-43291946)
chr3 (83-148)||(42085063-42085127)
chr3 (74-138)||(21126541-21126604)
[»] chr1 (7 HSPs)
chr1 (71-156)||(39959838-39959923)
chr1 (75-157)||(2736174-2736256)
chr1 (75-159)||(1076189-1076273)
chr1 (83-148)||(5298760-5298824)
chr1 (83-148)||(25948209-25948273)
chr1 (83-148)||(47490286-47490350)
chr1 (76-156)||(1093781-1093861)
[»] chr2 (1 HSPs)
chr2 (73-156)||(36011884-36011967)
[»] chr4 (4 HSPs)
chr4 (76-157)||(33075797-33075878)
chr4 (76-134)||(42678854-42678912)
chr4 (83-148)||(43930118-43930182)
chr4 (82-147)||(55899070-55899135)
[»] scaffold0648 (1 HSPs)
scaffold0648 (83-148)||(7753-7817)
[»] chr8 (1 HSPs)
chr8 (83-148)||(33802591-33802655)
[»] chr5 (2 HSPs)
chr5 (83-148)||(12974260-12974324)
chr5 (83-148)||(40579690-40579754)
[»] chr6 (1 HSPs)
chr6 (82-147)||(30809870-30809935)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 28549837 - 28549993
Alignment:
Q  1 ttcaaaagctataaaattcattttaacaaaaatgttagttgtatttatacatgtgacgcgaaattagatcaacaagttgatatggccgagttggtctaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28549837 ttcaaaagctataaaattcattttaacaaaaatgttagttgtatttatacatgtgacgcgaaattaaatcaacaagttgatatggccgagttggtctaag 28549936  T
Q  101 gcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaa 157  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28549937 gcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaacaa 28549993  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 13 - 160
Target Start/End: Original strand, 28545434 - 28545581
Alignment:
Q  13 aaaattcattttaacaaaaatgttagttgtatttatacatgtgacgcgaaattagatcaacaagttgatatggccgagttggtctaaggcgccagattaa 112  Q
    ||||||||||||||| || ||||||||| ||||||||| ||| |||||||| || | ||| |||||||||||||||||||||||||||||||||||||||    
T  28545434 aaaattcattttaacgaacatgttagttatatttatacttgtaacgcgaaactataacaaaaagttgatatggccgagttggtctaaggcgccagattaa 28545533  T
Q  113 ggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaattc 160  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||    
T  28545534 ggttctggtccgaaagggcgtgggttcaaatcccactgtcaacaattc 28545581  T

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Target: chr7; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 74 - 156
Target Start/End: Original strand, 28556078 - 28556160
Alignment:
Q  74 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  28556078 aagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 28556160  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 156
Target Start/End: Original strand, 48253855 - 48253936
Alignment:
Q  75 agttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  48253855 agttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 48253936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 47958583 - 47958503
Alignment:
Q  76 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  47958583 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 47958503  T

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Target: chr7; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 24142972 - 24142889
Alignment:
Q  73 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||    
T  24142972 caagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgatagggtgtgggttcaaatcccactctcaaca 24142889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 42617475 - 42617411
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  42617475 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42617411  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 2415882 - 2415947
Alignment:
Q  82 atggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatccca 147  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||  |||||||    
T  2415882 atggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 2415947  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 148
Target Start/End: Original strand, 46961385 - 46961430
Alignment:
Q  103 gccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    |||||||||||||||||||| |||| |||||||||| |||||||||    
T  46961385 gccagattaaggttctggtctgaaaaggcgtgggttcaaatcccac 46961430  T

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Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 21127846 - 21127734
Alignment:
Q  44 tttatacatgtgacgcgaaattagatcaacaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaat 143  Q
    |||||| |||| ||||||||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  21127846 tttatatatgtaacgcgaaatcataacaataagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaat 21127747  T
Q  144 cccactgtcaaca 156  Q
    |||||||||||||    
T  21127746 cccactgtcaaca 21127734  T

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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 43291946 - 43291863
Alignment:
Q  73 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  43291946 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 43291863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 42085127 - 42085063
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  42085127 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 42085063  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 21126604 - 21126541
Alignment:
Q  74 aagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtt 138  Q
    ||||||| ||| ||||||||| ||||||| || ||||||||||||| ||| |||||| |||||||    
T  21126604 aagttgagatgaccgagttggcctaaggcaccggattaaggttctgatcc-aaagggagtgggtt 21126541  T

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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 71 - 156
Target Start/End: Original strand, 39959838 - 39959923
Alignment:
Q  71 aacaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39959838 aacaagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactgtcaaca 39959923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 75 - 157
Target Start/End: Original strand, 2736174 - 2736256
Alignment:
Q  75 agttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaa 157  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  2736174 agttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaa 2736256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 75 - 159
Target Start/End: Original strand, 1076189 - 1076273
Alignment:
Q  75 agttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaatt 159  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  1076189 agttgagatggccgagttggtctaaggcgtcagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaatt 1076273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 5298760 - 5298824
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  5298760 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 5298824  T

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Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 25948209 - 25948273
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  25948209 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 25948273  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 47490350 - 47490286
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  47490350 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 47490286  T

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Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 1093781 - 1093861
Alignment:
Q  76 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||  || ||| ||||||| ||||||| || ||||||    
T  1093781 gttgagatggccgagttggtctaaggcgcccgattaaggttctggtctaaatgggtgtgggttcaaatcccgctctcaaca 1093861  T

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Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 73 - 156
Target Start/End: Original strand, 36011884 - 36011967
Alignment:
Q  73 caagttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaaca 156  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  36011884 caagttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaaca 36011967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 33075797 - 33075878
Alignment:
Q  76 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccactgtcaacaa 157  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  33075797 gttgagatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggttcaaatcccactctcaacaa 33075878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 42678912 - 42678854
Alignment:
Q  76 gttgatatggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtg 134  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  42678912 gttgagatggccgagttagtctaaggcgccagattaaggttctcgtccgaaagggcgtg 42678854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 43930182 - 43930118
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  43930182 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 43930118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 55899135 - 55899070
Alignment:
Q  82 atggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatccca 147  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||  |||||||    
T  55899135 atggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 55899070  T

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Target: scaffold0648 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 7817 - 7753
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  7817 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 7753  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Complemental strand, 33802655 - 33802591
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  33802655 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 33802591  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 12974260 - 12974324
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  12974260 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 12974324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 148
Target Start/End: Original strand, 40579690 - 40579754
Alignment:
Q  83 tggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatcccac 148  Q
    ||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||    
T  40579690 tggccgagt-ggtctaaggcgccagatttaggctctggtccgaaagggcgtgggttcaaatcccac 40579754  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 147
Target Start/End: Complemental strand, 30809935 - 30809870
Alignment:
Q  82 atggccgagttggtctaaggcgccagattaaggttctggtccgaaagggcgtgggtttaaatccca 147  Q
    |||||||||||||||||||||||||| || |||| ||||||||||||||| ||||||  |||||||    
T  30809935 atggccgagttggtctaaggcgccagtttcaggtactggtccgaaagggcatgggttcgaatccca 30809870  T

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