View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_6 (Length: 427)
Name: NF5275_low_6
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 373; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 29611608 - 29612007
Alignment:
| Q |
7 |
tcgaagaaaatattttgttaagatcaatgttccactgtagggttttgtgatttctgactgggagggaattgatgaattatgccaaccttatgggtccgat |
106 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29611608 |
tcgaataaaatattttgttaagatcaatgttccattgtagggttttgtgatttctgactgggagggaattgatgaattatgccaaccttatgggtccgat |
29611707 |
T |
|
| Q |
107 |
tatcgttattgcatcgccacttcaattaatgctggaattgacatggtacagatcttcagtcccttgtaatattttaacatagattgcttgatttcatttt |
206 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29611708 |
tatcgttattgcatctccacttcaattaatgctggaattgacatggtacagatcttcagtccct-gtaatattttaacatagattgcttgatttcatttt |
29611806 |
T |
|
| Q |
207 |
aaatttgtatatttgtgtacatatgcaggtgatggttcctttaagatatgaacaattcatggaagagttaacgtctctagttcaatcgggggaagtacca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29611807 |
aaatttgtatatttgtgtacatatgcaggtgatggttcctttaagatatgaacaattcatggaagagttaacgtctctagttcaatcgggggaagtacca |
29611906 |
T |
|
| Q |
307 |
atgaccagaattgacgatgctgtcgagcggattttaagagtcaagtttattgctgaactttttgaatttcctttaactgacagatctttgctggatactg |
406 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29611907 |
atgaccagaattgatgatgctgtcgagcggattttaagagtgaagtttattgctgaactttttgaatttcctttaactgacagatctttgctggatactg |
29612006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 32 - 403
Target Start/End: Complemental strand, 29582587 - 29582216
Alignment:
| Q |
32 |
aatgttccactgtagggttttgtgatttctgactgggagggaattgatgaattatgccaaccttatgggtccgattatcgttattgcatcgccacttcaa |
131 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||||||| ||||||| | |
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| T |
29582587 |
aatgctccactgtagggttttgtgatttctgactgggagggaattgatgaattatgtcaaccatatggttcagattatcgttattgcatttccacttcca |
29582488 |
T |
|
| Q |
132 |
ttaatgctggaattgacatggtacagatcttcagtcccttgtaatattttaacatagattgcttgatttcattttaaatttgtatatttgtgtacatatg |
231 |
Q |
| |
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||||||||||||| ||||||||| | | ||||| || |||| |||| ||||||||||||||||||||||||||||| ||||||| || |||| || |
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| T |
29582487 |
ttaatgctggaatcgacatggtagaaaacttcaaatccaa-taatgttttctcatagattgcttgatttcattttaaatttatatatttatgaacatgtg |
29582389 |
T |
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| Q |
232 |
--caggtgatggttcctttaagatatgaacaattcatggaagagttaacgtctctagttcaatcgggggaagtaccaatgaccagaattgacgatgctgt |
329 |
Q |
| |
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||||||||||||||| ||||||||||| |||||||||||||||| | |||| |||||||||| ||| |||||||||| |||| ||||| |||||||| |
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| T |
29582388 |
tgcaggtgatggttcctataagatatgaaaaattcatggaagagttgatgtctttagttcaatcaggg-aagtaccaatatccaggattgatgatgctgt |
29582290 |
T |
|
| Q |
330 |
cgagcggattttaagagtcaagtttattgctgaactttttgaatttcctttaactgacagatctttgctggata |
403 |
Q |
| |
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||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29582289 |
tgagaggattttaagagtgaagtttattgctgaactttttgaatttcctttaactgacagatctttgctggata |
29582216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 30680570 - 30680693
Alignment:
| Q |
89 |
caaccttatgggtccgattatcgttattgcatcgccacttcaattaatgctggaattgacatggtacagatcttcagtcc-cttgtaat-attttaacat |
186 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| ||||||| || ||||||| ||||| |||||| ||||||||| ||| | ||| | |||||||||| |
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| T |
30680570 |
caaccttatgggtcagattatcgttatcgcatctccacttccgttgatgctggtattgatatggtatagatcttcattcctatagtattaattttaacat |
30680669 |
T |
|
| Q |
187 |
agattgcttgatttcattttaaat |
210 |
Q |
| |
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| ||| |||||||||| ||||||| |
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| T |
30680670 |
atattacttgatttcaatttaaat |
30680693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 30746376 - 30746301
Alignment:
| Q |
89 |
caaccttatgggtccgattatcgttattgcatcgccacttcaattaatgctggaattgacatggtacagatcttca |
164 |
Q |
| |
|
|||||||||||||| |||||| ||||| ||||| ||||||| || ||||||| ||||| |||| | ||||||||| |
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| T |
30746376 |
caaccttatgggtcagattattgttatcgcatctccacttccgttgatgctggtattgatatggcatagatcttca |
30746301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 261 - 403
Target Start/End: Complemental strand, 25127773 - 25127631
Alignment:
| Q |
261 |
attcatggaagagttaacgtctctagttcaatcgggggaagtaccaatgaccagaattgacgatgctgtcgagcggattttaagagtcaagtttattgct |
360 |
Q |
| |
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|||||| ||||| || || ||| || || |||| || ||||| ||||||| |||||| || |||||||| ||||| ||||| ||||| |||||| |||| |
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| T |
25127773 |
attcatcgaagaattgacctctttaattgaatcaggtgaagtgccaatgagcagaatcgatgatgctgttgagcgaattttgagagtaaagtttgctgct |
25127674 |
T |
|
| Q |
361 |
gaactttttgaatttcctttaactgacagatctttgctggata |
403 |
Q |
| |
|
| || ||||||||||| |||| ||||||||||||||| |||| |
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| T |
25127673 |
ggtctatttgaatttccattaagtgacagatctttgctagata |
25127631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 41 - 166
Target Start/End: Complemental strand, 25127992 - 25127867
Alignment:
| Q |
41 |
ctgtagggttttgtgatttctgactgggagggaattgatgaattatgccaaccttatgggtccgattatcgttattgcatcgccacttcaattaatgctg |
140 |
Q |
| |
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|||||||||||||||||||| ||||||||||| | || | | || ||||| | ||||| |||||||| || |||||| || || | | ||||||| |
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| T |
25127992 |
ctgtagggttttgtgatttccgactgggaggggctcgaccgactttgtaaacctcacgggtcagattatcggtactgcatctcctctgccgtcaatgctg |
25127893 |
T |
|
| Q |
141 |
gaattgacatggtacagatcttcagt |
166 |
Q |
| |
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|||||||||||||||| ||||||||| |
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| T |
25127892 |
gaattgacatggtacatatcttcagt |
25127867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 10265062 - 10264994
Alignment:
| Q |
174 |
aatattttaacatagattgcttgatttcattttaaatttgtatatttgtgtacatatgcaggtgatggt |
242 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||| |||||| || | |||||||||||||||| |
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|
| T |
10265062 |
aatattttaacatatattgtttgatttcattttatatttatatattcatgaaaatatgcaggtgatggt |
10264994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 20301182 - 20301251
Alignment:
| Q |
173 |
taatattttaacatagattgcttgatttcattttaaatttgtatatttgtgtacatatgcaggtgatggt |
242 |
Q |
| |
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||||||||||||||| |||| |||||||| |||||||||| || ||| || | ||||| |||||||||| |
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| T |
20301182 |
taatattttaacatatattgtttgatttctttttaaatttatacattcatgaaaatatgaaggtgatggt |
20301251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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