View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5275_low_9 (Length: 409)
Name: NF5275_low_9
Description: NF5275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5275_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 20 - 205
Target Start/End: Complemental strand, 43021444 - 43021259
Alignment:
| Q |
20 |
gaacacagcgacaaaagagctcgcgagtaaaccacgaaggaaatttagtgctacagtccagtctcaactatgccccaccacctccatgtttttcggccag |
119 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43021444 |
gaacactgcgacaaaagagctcgcgagtaaaccacaaaggaaatttagtgctacagtccggtctcaactatgccccaccacctccatgtttttcggccag |
43021345 |
T |
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| Q |
120 |
aatgtgatttaattggatagaccactattcgtgagcactttgttataaaaactgttgctacaaatagcattactgtttattaaaat |
205 |
Q |
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| T |
43021344 |
actgtgatttaattggatagaccactattcgtgagcactttgttataaaaactgtcgctacaaatagcattactgtttattaaaat |
43021259 |
T |
|
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Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 13408229 - 13408051
Alignment:
| Q |
20 |
gaacacagcgacaaaagagctcgcgagtaaaccacgaaggaaatttagtgctacagtccagtctcaactatgccccaccacctccatgtttttcggccag |
119 |
Q |
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||||||| |||||||||||||| ||| ||||||| ||||||||| ||||||||| ||||| ||||||||| |||||||||||||||||||| ||||||| |
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| T |
13408229 |
gaacacaacgacaaaagagctcaagagaaaaccacaaaggaaattcagtgctacattccagcctcaactataccccaccacctccatgttttccggccag |
13408130 |
T |
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| Q |
120 |
aatgtgatttaattggatagaccactattcgtgagcactttgttataaaaactgttgctacaaatagcattactgttta |
198 |
Q |
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||||||||||||||||||||||| ||| |||||||||| |||||||||| ||| |||||||||||||||||||||| |
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| T |
13408129 |
gttgtgatttaattggatagaccacaattagtgagcacttcgttataaaaattgtccctacaaatagcattactgttta |
13408051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 71 - 181
Target Start/End: Original strand, 12929848 - 12929959
Alignment:
| Q |
71 |
tacagtccagtctcaactatgccccaccacctccatgtttttcggccagaatgtgatttaattggatagaccactattc-gtgagcactttgttataaaa |
169 |
Q |
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|||||||||| ||||| ||||||||||||||||| || ||| ||||||| ||||||||||||| |||||||| |||| | | ||||| ||||||||| |
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| T |
12929848 |
tacagtccagcctcaattatgccccaccacctccgtgctttgcggccaggctgtgatttaattgaatagaccataattcttttaacacttcgttataaaa |
12929947 |
T |
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| Q |
170 |
actgttgctaca |
181 |
Q |
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||||| |||||| |
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| T |
12929948 |
actgtcgctaca |
12929959 |
T |
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Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 13377659 - 13377484
Alignment:
| Q |
20 |
gaacacagcgacaaaagagctcgcgagtaaaccacgaaggaaatttagtgctacagtccagtctcaactatgccccaccacctccatgtttttcggccag |
119 |
Q |
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||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||| ||| |
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| T |
13377659 |
gaacacagcgacaaaagagctcgcgagaaaactacgaagaaaatttagtgctacagtacagtcc--actataccccaccacctccatgttttccggacag |
13377562 |
T |
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| Q |
120 |
aatgtgatttaattggatagaccactattcgtgagcactttgttataaaaactgttgctacaaatagcattactgttt |
197 |
Q |
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| T |
13377561 |
gctctgatttaattggatagaccataattcgtaagtacttcgttataaaaaatgtcgctacaaatagcattactgttt |
13377484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 29 - 203
Target Start/End: Original strand, 39136391 - 39136564
Alignment:
| Q |
29 |
gacaaaagagctcgcgagtaaaccacgaaggaaatttagtgctacagtccagtctcaactatgccccaccacctccatgtttttcggccagaatgtgatt |
128 |
Q |
| |
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||||||||||||||| || ||||||| | | ||||||| |||||||| || |||||| || ||||||||||||||||||||| || | | | ||||| |
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| T |
39136391 |
gacaaaagagctcgccagaaaaccactgacaagatttagtactacagtctagcctcaacaataccccaccacctccatgttttttggacgggctctgatt |
39136490 |
T |
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| Q |
129 |
taattggatagaccactattcgtgagcactttgttataaaaactgttgctacaaatagcattactgtttattaaa |
203 |
Q |
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||||||||||||||| ||| |||||||| | |||||||||||| | |||||||||| ||||| ||||||||||| |
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| T |
39136491 |
taattggatagaccataatttgtgagcac-tcgttataaaaactatcgctacaaataacattaatgtttattaaa |
39136564 |
T |
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