View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5276-Insertion-4 (Length: 110)

Name: NF5276-Insertion-4
Description: NF5276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5276-Insertion-4
NF5276-Insertion-4
[»] chr1 (4 HSPs)
chr1 (8-110)||(32593308-32593410)
chr1 (11-110)||(51823884-51823983)
chr1 (11-110)||(31526994-31527093)
chr1 (11-110)||(37030333-37030432)
[»] chr3 (5 HSPs)
chr3 (11-110)||(49190878-49190977)
chr3 (11-110)||(49207122-49207221)
chr3 (11-110)||(49211696-49211795)
chr3 (11-110)||(49202167-49202266)
chr3 (11-110)||(49187187-49187286)
[»] chr8 (1 HSPs)
chr8 (14-107)||(26756168-26756261)


Alignment Details
Target: chr1 (Bit Score: 99; Significance: 2e-49; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-49
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 32593410 - 32593308
Alignment:
Q  8 ccttctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  32593410 ccttctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctg 32593311  T
Q  108 cct 110  Q
    |||    
T  32593310 cct 32593308  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 8e-43
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 51823884 - 51823983
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51823884 tctgcctcttttttctttgcgtatagatctgcttcagctgcttgcttgcacgcataaaatgttgcatctgccaatgctttctgtgcttctgcctctgcct 51823983  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 5e-38
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 31526994 - 31527093
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    |||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  31526994 tctgcctcttttttctttgcatatagctccgcttcggctgcttgcttgcgcgcataaaatgttgcatctgacaatgctttctgtgcttctgcctctgcct 31527093  T

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Target: chr1; HSP #4
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 37030333 - 37030432
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    |||||||| ||||||||||| || |||||||||||||||||||| ||||  ||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  37030333 tctgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgatgctttctgtgcttctgcctctgcct 37030432  T

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Target: chr3 (Bit Score: 72; Significance: 3e-33; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 49190878 - 49190977
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    |||||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||||| ||||| |||||||||||||||||| |||||||||    
T  49190878 tctgcctcctttttctttgcatatagctctgcttcagctgcttgcgtgcgagcataaaatgttgcgtctgctaatgctttctgtgcttctgcctctgcct 49190977  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 49207122 - 49207221
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| || |||||| |||||||||    
T  49207122 tctgcctcttttttctttgcgtatagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgcgcttctgcctctgcct 49207221  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-33
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 49211696 - 49211795
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| | ||||||||||||||| ||||||||| |||||||||    
T  49211696 tctgcctcttttttctttgcgtacagctctgcttcagcttcttgcttgcgagcataaaatgtggaatctgccaatgctttttgtgcttctgcctctgcct 49211795  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 7e-31
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 49202167 - 49202266
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    ||||||||||||||||||||||||||||||||||| ||| |||||||||  ||||||||||||||||||||  | ||||||||||||||| |||||||||    
T  49202167 tctgcctcttttttctttgcgtatagctctgcttcggcttcttgcttgcaagcataaaatgttgcatctgctgacgctttctgtgcttctgcctctgcct 49202266  T

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Target: chr3; HSP #5
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 11 - 110
Target Start/End: Original strand, 49187187 - 49187286
Alignment:
Q  11 tctgcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctgcct 110  Q
    |||||||| ||||||||||| || |||||||||||||||||||| ||||  ||||||||||||||||||||| | ||||||||||||||| |||||||||    
T  49187187 tctgcctcctttttctttgcataaagctctgcttcagctgcttgtttgctagcataaaatgttgcatctgccgacgctttctgtgcttctgcctctgcct 49187286  T

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Target: chr8 (Bit Score: 54; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 14 - 107
Target Start/End: Original strand, 26756168 - 26756261
Alignment:
Q  14 gcctcttttttctttgcgtatagctctgcttcagctgcttgcttgcgcgcataaaatgttgcatctgccaatgctttctgtgcttctccctctg 107  Q
    ||||| || |||||||| |||||||||||||| |||||||| || || |||||||||||||||| |||||||||| ||||||||||| ||||||    
T  26756168 gcctccttcttctttgcatatagctctgcttcggctgcttgtttacgagcataaaatgttgcatttgccaatgctatctgtgcttctgcctctg 26756261  T

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