View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5276_high_1_N (Length: 475)
Name: NF5276_high_1_N
Description: NF5276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5276_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 36640666 - 36640964
Alignment:
| Q |
20 |
acatcatcgacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
119 |
Q |
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| T |
36640666 |
acatcagcaacacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagat |
36640765 |
T |
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| Q |
120 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
219 |
Q |
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| T |
36640766 |
ttctctatttctgcaaaataaattttgaattgcaaactagcaagcc--acacacttcaatcctcaggccgccaaattctctgcccctccatattcacgcc |
36640863 |
T |
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| Q |
220 |
acgttttgctaaagcatctgcaaatgagttcatttctctgtttacatgcacaaactctacctgatgaagtgctgccaagcaattatgcagtttgtcactg |
319 |
Q |
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| T |
36640864 |
acgttttgctaaagcatctgcaaatgagttcatttctctgtttacatgcacaaactctacctgatgaagtgctgccaagcaattatgcagtttgtcactg |
36640963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 29 - 320
Target Start/End: Original strand, 36633307 - 36633598
Alignment:
| Q |
29 |
acacaatcccacctatcagctaaacacgccccaccacaacagcatccgaatcagtcaggacagcagcaaactgacagatatacaaatagatttctctatt |
128 |
Q |
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| T |
36633307 |
acacaatcccacctatcagctaaacacaccccaccacaacagcatccgaatcagtcaggacagcagcaaacagacagatatacaaatagatttctctatt |
36633406 |
T |
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| Q |
129 |
tctgcaaaataaattttgaattgcaaactagcaagcctcacacacttcaatcctcaggccgccaaattctctgcccctccatattcacgccacgttttgc |
228 |
Q |
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| T |
36633407 |
tctgtaaaataaattttgaattgcaaactagcaagcctcacacactttaatccataggccaccaaattctctgcccctccatattcacgccactttttgc |
36633506 |
T |
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| Q |
229 |
taaagcatctgcaaatgagttcatttctctgtttacatgcacaaactctacctgatgaagtgctgccaagcaattatgcagtttgtcactga |
320 |
Q |
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| T |
36633507 |
taaagcatctgcaaatgagttcatttctctgtttacatgcacaaactctacctgatgcagtgctgccaagcaattatgcagtttgtcactga |
36633598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 378 - 467
Target Start/End: Original strand, 45392552 - 45392641
Alignment:
| Q |
378 |
gtggcgacatggtgactcctagtaatttgctcaccctggtgatgaagggtgaccaatgtcttggcagcatcctctcttatgttctctgct |
467 |
Q |
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| T |
45392552 |
gtggcgacatggtgactcctagtaatttgctcaccctggtgatgaagggtgaccaatgtcttggcagcatcctctcttatgttctctgct |
45392641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 380 - 467
Target Start/End: Complemental strand, 7766965 - 7766878
Alignment:
| Q |
380 |
ggcgacatggtgactcctagtaatttgctcaccctggtgatgaagggtgaccaatgtcttggcagcatcctctcttatgttctctgct |
467 |
Q |
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| T |
7766965 |
ggcgacatggtgagtcctagtaatttgctcaccctggtgatgaagggtgacaaatgtcttggtagcattctctcttatgttctctgct |
7766878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 7216621 - 7216685
Alignment:
| Q |
389 |
gtgactcctagtaatttgctcaccctggtgatgaagggtgaccaatgtcttggcagcatcctctc |
453 |
Q |
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||||||||||||||| ||||| ||||| ||||| || ||||||| ||||||| |||||| |||| |
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| T |
7216621 |
gtgactcctagtaatctgctcgccctgatgatgcagcatgaccaaagtcttggtagcatcttctc |
7216685 |
T |
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