View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5277-Insertion-1 (Length: 769)
Name: NF5277-Insertion-1
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5277-Insertion-1 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 719; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 719; E-Value: 0
Query Start/End: Original strand, 7 - 769
Target Start/End: Complemental strand, 46373240 - 46372479
Alignment:
| Q |
7 |
agtctctcagtgtgagcagaaattattaaagtggttataggtaataaatccttacttggggcaattaactgcatcctcttcatctacaagcttaatcgta |
106 |
Q |
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| T |
46373240 |
agtctctcagtgtgagcagaaattattaaagtggttataggtaataaatccttacttggggcaattaactgcatcctcttcatctacaagcttaatcgta |
46373141 |
T |
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| Q |
107 |
aaatctttccaggaaaagggtagctgtcctgcagtatacagactttttctgccatcataagctgggagcctcatccctaaatcagactctttatacaacc |
206 |
Q |
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| T |
46373140 |
aaatctttccaggaaaagggtagctgtcctgcagtatacagactttttctgccatcataagctgggagcctcatccctaaatcagactctttatacaacc |
46373041 |
T |
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| Q |
207 |
ttacaagttcagctataatggacctgtttactgttcttgaagacacctcaggggtaatagtaaccttcaatattaaccaacacatgataacattaattaa |
306 |
Q |
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| T |
46373040 |
ttacaagttcagctataatggacctgtttactgttcttgaagacacctcaggggtaatagtaaccttcaatattaaccaacacatgataacattaattaa |
46372941 |
T |
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| Q |
307 |
attaaaccaaaaagcaacaataggaacataagcctcagaccaaattaaagtctcataaatagcacnnnnnnnnnnnnnggactgcaaaaatcagaaccac |
406 |
Q |
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| T |
46372940 |
attaaaccaaaaagcaacaataggaacataagcctcagaccaaattaaagtctcataaatagcacaacaaaaaaaaa-ggactgcaaaaatcagaaccac |
46372842 |
T |
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| Q |
407 |
tctccctataaaaggaaaatcacaggatgaacttaaataccatttaattgcttttttcagttttgtgataaatacaaaggaaaaggtcttacatcatatt |
506 |
Q |
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| T |
46372841 |
tctccctataaaaggaaaatcacaggatgaacttaaataccatttaattgcttttttcagttttgtgataaatacaaaggaaaaggtcttacatcatatt |
46372742 |
T |
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| Q |
507 |
ggtttaagtccttgtctggtaactctgcaaagaagtggttagccttcacaatacattttgtcccaacttgtccaaatccaggtctacgagtaaagttcat |
606 |
Q |
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| T |
46372741 |
ggtttaagtccttgtctggtaactctgcaaagaagtggttagccttcacaatacattttgtcccaacttgtccaaatccaggtctacgagtaaagttcat |
46372642 |
T |
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| Q |
607 |
agacttgcttgaagtaggaaaaccaacatcaatgtcaccagagttgtaaccattttcaacatttccatttatagcacttgttatttcagtacatggtctt |
706 |
Q |
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| T |
46372641 |
agacttgcttgaagtaggaaaaccaacatcaatgtcaccagagttgtaaccattttcaacatttccatttatagcacttgttatttcagtacatggtctt |
46372542 |
T |
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| Q |
707 |
gaactgggtctcgtcaaaatttctccttgatcagattttctaccacctcttccccttcttctt |
769 |
Q |
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| T |
46372541 |
gaactgggtctcgtcaaaatttctccttgatcagattttctaccacctcttccccttcttctt |
46372479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 57 - 272
Target Start/End: Complemental strand, 15407723 - 15407508
Alignment:
| Q |
57 |
cttacttggggcaattaactgcatcctcttcatctacaagcttaatcgtaaaatctttccaggaaaagggtagctgtcctgcagtatacagactttttct |
156 |
Q |
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| T |
15407723 |
cttacttggggccattaattccatcctcttcttcgataagcttaatcttaaactctctccaagaaaagggaagaactcctgctgtgtaaagacttttcct |
15407624 |
T |
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| Q |
157 |
gccatcataagctgggagcctcatccctaaatcagactctttatacaaccttacaagttcagctataatggacctgtttactgttcttgaagacacctca |
256 |
Q |
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| T |
15407623 |
gccatcatatgctggaagcctcatcccaaggtcagattctttatacagcctcacaagttctgctatgatagacctgtttacggctttcgaagacacttcc |
15407524 |
T |
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| Q |
257 |
ggggtaatagtaacct |
272 |
Q |
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| T |
15407523 |
ggtgtaatagttacct |
15407508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 494 - 629
Target Start/End: Complemental strand, 15406915 - 15406780
Alignment:
| Q |
494 |
cttacatcatattggtttaagtccttgtctggtaactctgcaaagaagtggttagccttcacaatacattttgtcccaacttgtccaaatccaggtctac |
593 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || || ||||| |||||||| ||| |||||||| | || ||||| |
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| T |
15406915 |
cttacatcatattggttcaagtccttgtctggtaattctgcaaagaagtggttggctttaacaatgcattttgtaccagcttgtccataacctggtcttt |
15406816 |
T |
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| Q |
594 |
gagtaaagttcatagacttgcttgaagtaggaaaac |
629 |
Q |
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| T |
15406815 |
gagcaaaactcaaagatttacttgaagtaggaaaac |
15406780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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