View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5277-Insertion-2 (Length: 627)

Name: NF5277-Insertion-2
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5277-Insertion-2
NF5277-Insertion-2
[»] chr1 (3 HSPs)
chr1 (60-461)||(47482592-47482991)
chr1 (216-425)||(26173633-26173848)
chr1 (277-387)||(12029723-12029833)
[»] chr4 (3 HSPs)
chr4 (275-387)||(28145216-28145328)
chr4 (277-387)||(24274825-24274935)
chr4 (340-382)||(40768002-40768044)
[»] chr7 (5 HSPs)
chr7 (277-387)||(15582326-15582436)
chr7 (277-397)||(24565611-24565731)
chr7 (326-387)||(664479-664540)
chr7 (260-353)||(8063091-8063184)
chr7 (327-392)||(2931127-2931192)
[»] chr5 (1 HSPs)
chr5 (277-387)||(35892138-35892248)
[»] chr6 (4 HSPs)
chr6 (150-382)||(35122359-35122597)
chr6 (277-382)||(33344295-33344400)
chr6 (245-392)||(13419230-13419378)
chr6 (7-56)||(11273314-11273363)
[»] chr2 (1 HSPs)
chr2 (278-387)||(1904634-1904743)
[»] scaffold0031 (1 HSPs)
scaffold0031 (253-387)||(106385-106520)
[»] scaffold0007 (1 HSPs)
scaffold0007 (212-382)||(243937-244105)
[»] chr8 (3 HSPs)
chr8 (7-56)||(12181065-12181114)
chr8 (7-56)||(12425493-12425542)
chr8 (247-383)||(40038334-40038471)


Alignment Details
Target: chr1 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 60 - 461
Target Start/End: Original strand, 47482592 - 47482991
Alignment:
Q  60 atcagatgaatccgctttaaagatcctaatctttatcgaatgttgatggcataattgcttgcaacgttgattgcaagcaacatagagtcggatgttggta 159  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||    
T  47482592 atcagatgaatccgatttaaagatcctaatctttatcgaatgttgatggcataattgcttgtaac-ttgattgcatgcaacatagagtcggatgttggta 47482690  T
Q  160 atcaacaagtctaaccaaagagttaactgtgaagtagatattttataagtttttcgtcttcttcaagattcggatcactctcatggtatacgtttctttg 259  Q
    |||||||||||||||||||||||||  ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47482691 atcaacaagtctaaccaaagagttatttgtgaagcagatattttataagtttt-cgtcttcttcaagattcggatcactctcatggtatacgtttctttg 47482789  T
Q  260 ttgtgaaaattctttgattaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcgg 359  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47482790 ttgtgaagattctttgattaaaggagcatattcctaacattgttttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcgg 47482889  T
Q  360 acgctcttcaagcttaggtgtgatttttggacagactctcctattggagttaaattcagtgttgagatttgatgtccgaagttaagccttgtttttagga 459  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  47482890 acgctctttaagcttaggtgtgattttttgacagactctcctattggagttaaagtcactgttgagatttgatgtccgaagttaagccttgtttttagga 47482989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 216 - 425
Target Start/End: Original strand, 26173633 - 26173848
Alignment:
Q  216 tcttcttcaagattcggatcactctca--tg---gtatacgtttctttgttgtgaaa-attctttgattaaaggagcatattcctaacattgctttccaa 309  Q
    ||||||||||||| | |||||||||||  ||   ||||||| ||||||||||  ||| ||| || | ||||| |||||||||||||||||| ||||||||    
T  26173633 tcttcttcaagatccagatcactctcaaatgcatgtatacgcttctttgttggtaaagatttttgggttaaatgagcatattcctaacatttctttccaa 26173732  T
Q  310 tatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttaggtgtgatttttggacagactctcctattggagt 409  Q
     || | |||| || | ||||| |||| ||| |||| |||||||||||||| ||||||||||| |||||||||| |||| | ||| ||| || || |||||    
T  26173733 catatgcttcgagagggcaaccattgtgcatatttcttggccaagctcgggcgctcttcaagattaggtgtgactttttggcaggctcccccatcggagt 26173832  T
Q  410 taaattcagtgttgag 425  Q
    |||| ||| |||||||    
T  26173833 taaagtcattgttgag 26173848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 387
Target Start/End: Complemental strand, 12029833 - 12029723
Alignment:
Q  277 ttaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttag 376  Q
    |||||| |||||||||||||||||  ||||||| |||| |||| || | | ||| |||||||| |||| ||  |||||||| | || |||||||| || |    
T  12029833 ttaaagaagcatattcctaacatttatttccaacatgtgcttcgagagtgtaaccattgcgcatatttcttaaccaagctcaggcgttcttcaagatttg 12029734  T
Q  377 gtgtgattttt 387  Q
    |||||| ||||    
T  12029733 gtgtgactttt 12029723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 275 - 387
Target Start/End: Complemental strand, 28145328 - 28145216
Alignment:
Q  275 gattaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagctt 374  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||| | ||||  ||||| || |||| |||  |||||| || ||||||||||| ||    
T  28145328 gattaaaggagcatattcctaacatttctttccaacatgtacttcaagagggcaatcattgcacatatttcttgatcaagctggggcgctcttcaagatt 28145229  T
Q  375 aggtgtgattttt 387  Q
    ||| |||||||||    
T  28145228 aggcgtgattttt 28145216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 277 - 387
Target Start/End: Complemental strand, 24274935 - 24274825
Alignment:
Q  277 ttaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttag 376  Q
    |||||||||||||||| ||||||| |||||||| |||| |||| || | | ||| ||||||||||||| |||| ||| ||| | ||||||||||| ||||    
T  24274935 ttaaaggagcatattcgtaacatttctttccaacatgtgcttcgagagggtaaccattgcgcaaatttcttggtcaacctcaggcgctcttcaagattag 24274836  T
Q  377 gtgtgattttt 387  Q
    |||||| ||||    
T  24274835 gtgtgactttt 24274825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 340 - 382
Target Start/End: Complemental strand, 40768044 - 40768002
Alignment:
Q  340 aattttttggccaagctcggacgctcttcaagcttaggtgtga 382  Q
    ||||| |||||||||||||||||||||||| | ||||||||||    
T  40768044 aatttcttggccaagctcggacgctcttcacggttaggtgtga 40768002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 7e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 277 - 387
Target Start/End: Original strand, 15582326 - 15582436
Alignment:
Q  277 ttaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttag 376  Q
    |||||||||||||||  ||||||| || ||||| |||| |||| || | ||||| |||||||| |||||||||||||||||||  |||||||||| ||||    
T  15582326 ttaaaggagcatatttgtaacatttctctccaacatgtgcttcgagagggcaaccattgcgcatattttttggccaagctcgggagctcttcaagattag 15582425  T
Q  377 gtgtgattttt 387  Q
    |||||| ||||    
T  15582426 gtgtgactttt 15582436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 277 - 397
Target Start/End: Complemental strand, 24565731 - 24565611
Alignment:
Q  277 ttaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttag 376  Q
    |||||||||||||||||||||||| ||||| || |||| |||| |||| | ||| |||||||| |||||||| | || ||||| | || |||||| |||     
T  24565731 ttaaaggagcatattcctaacatttctttctaacatgtgcttcgagtgggaaaccattgcgcatattttttgacgaatctcggtcacttttcaagattat 24565632  T
Q  377 gtgtgatttttggacagactc 397  Q
    |||||| |||| |||||||||    
T  24565631 gtgtgactttttgacagactc 24565611  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 664540 - 664479
Alignment:
Q  326 gcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttaggtgtgattttt 387  Q
    |||||||||||||| |||| |||||||||||||||||||||||||| ||| |||||| ||||    
T  664540 gcaactattgcgcatatttcttggccaagctcggacgctcttcaagattatgtgtgactttt 664479  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 260 - 353
Target Start/End: Original strand, 8063091 - 8063184
Alignment:
Q  260 ttgtgaaaattctttgattaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaa 353  Q
    ||||||| ||| || | |||||||||||||||||||||||| |||||||| |||| |||  || |   |||| |||| ||||||||||||||||    
T  8063091 ttgtgaagatttttggtttaaaggagcatattcctaacatttctttccaacatgtgcttagagaggaaaactgttgcacaaattttttggccaa 8063184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 392
Target Start/End: Complemental strand, 2931192 - 2931127
Alignment:
Q  327 caactattgcgcaaattttttggccaagctcggacgctcttcaagcttaggtgtgatttttggaca 392  Q
    |||| |||||||| |||| |||| |||| |||| ||||||||||| |||||||||| |||| ||||    
T  2931192 caaccattgcgcagatttattggtcaagttcgggcgctcttcaagattaggtgtgactttttgaca 2931127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 277 - 387
Target Start/End: Complemental strand, 35892248 - 35892138
Alignment:
Q  277 ttaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttag 376  Q
    |||||||||||||||| ||||||| |||||||| |||| || | || | ||||| |||||||| |||| |||||||||||||| ||||||||||| ||||    
T  35892248 ttaaaggagcatattcgtaacatttctttccaacatgtgctccgagagggcaaccattgcgcatatttcttggccaagctcgggcgctcttcaagattag 35892149  T
Q  377 gtgtgattttt 387  Q
     ||||| ||||    
T  35892148 atgtgactttt 35892138  T

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Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 150 - 382
Target Start/End: Original strand, 35122359 - 35122597
Alignment:
Q  150 gatgttggtaatcaacaagtctaaccaaagagttaactgtgaagtagatattttataagtttttcgtcttcttcaagattcggatcactctcatg----- 244  Q
    |||||||||||||||| | ||||  ||| ||||||  ||||||  ||||  |||| |||  |||||||||||||||||  | ||||||||||||          
T  35122359 gatgttggtaatcaacgactctattcaacgagttatttgtgaaacagattctttagaagcatttcgtcttcttcaagagccagatcactctcatatgtat 35122458  T
Q  245 gtatacgtttctttgttg-tgaaaattctttgattaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaatt 343  Q
    || ||||  ||||||||| |||| ||| || | ||||||||| |||||| ||||||| ||||| || |||| |||| || | ||||| |||||||| |||    
T  35122459 gtgtacgcctctttgttggtgaagatttttgggttaaaggagtatattcgtaacatttctttctaacatgtgcttcgagagggcaaccattgcgcatatt 35122558  T
Q  344 ttttggccaagctcggacgctcttcaagcttaggtgtga 382  Q
    | |||| |||| |||||||||||||||| ||| ||||||    
T  35122559 tcttggtcaagttcggacgctcttcaagattaagtgtga 35122597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 277 - 382
Target Start/End: Complemental strand, 33344400 - 33344295
Alignment:
Q  277 ttaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttag 376  Q
    ||||||||| |||||| ||||||| ||||| || |||| |||| || | |||||||||||||| |||| |||| |||| |||||||||||||||| |||     
T  33344400 ttaaaggagtatattcgtaacatttctttctaacatgtgcttcgagagggcaactattgcgcatatttcttggtcaagttcggacgctcttcaagattaa 33344301  T
Q  377 gtgtga 382  Q
    ||||||    
T  33344300 gtgtga 33344295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 245 - 392
Target Start/End: Complemental strand, 13419378 - 13419230
Alignment:
Q  245 gtatacgtttctttgttg-tgaaaattctttgattaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaatt 343  Q
    ||||| |||||||||||| |||| ||| || | ||||||||||||||||| |||||  ||||| || |||| |||| || | |||| |||||| || |||    
T  13419378 gtatatgtttctttgttggtgaagatttttgggttaaaggagcatattcccaacatctctttcgaacatgtgcttcgagagggcaattattgcacatatt 13419279  T
Q  344 ttttggccaagctcggacgctcttcaagcttaggtgtgatttttggaca 392  Q
    | |||||||||||  |||||||||||||  ||||||||| |||| ||||    
T  13419278 tcttggccaagcttagacgctcttcaagactaggtgtgactttttgaca 13419230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 11273363 - 11273314
Alignment:
Q  7 aaaagttagaggatgcaagtgcatcccctcaatgataagtggctccgcca 56  Q
    |||||| || |||||||||||||||| ||||||| || ||||||||||||    
T  11273363 aaaagtcaggggatgcaagtgcatcctctcaatggtacgtggctccgcca 11273314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 278 - 387
Target Start/End: Complemental strand, 1904743 - 1904634
Alignment:
Q  278 taaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttagg 377  Q
    ||||||||||||||| ||||||| |||||||| |||| |||  || | ||||| |||||| | |||| ||||||||||| || ||||||||||| | |||    
T  1904743 taaaggagcatattcgtaacatttctttccaacatgtgctttgagagggcaaccattgcgtagatttcttggccaagcttgggcgctcttcaagatcagg 1904644  T
Q  378 tgtgattttt 387  Q
    ||||| ||||    
T  1904643 tgtgactttt 1904634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 387
Target Start/End: Original strand, 106385 - 106520
Alignment:
Q  253 ttctttgttg-tgaaaattctttgattaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaattttttggcc 351  Q
    |||||||||| |||| ||| || | |||||||||||||||| ||||||| |||||||| |||| |||| || | ||||| ||| |||||| || ||||||    
T  106385 ttctttgttggtgaagatttttaggttaaaggagcatattcgtaacatttctttccaacatgtgcttcgagagtgcaaccattacgcaaacttcttggcc 106484  T
Q  352 aagctcggacgctcttcaagcttaggtgtgattttt 387  Q
    ||| |||  |||| ||| || |||||||||| ||||    
T  106485 aagttcgagcgctattcgagattaggtgtgactttt 106520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 212 - 382
Target Start/End: Original strand, 243937 - 244105
Alignment:
Q  212 ttcgtcttcttcaagattcggatcactctcatggtatacgtttctttgttg-tgaaaattctttgattaaaggagcatattcctaacattgctttccaat 310  Q
    |||||||||||||| ||||||| || || |||   ||||| |||||| ||| ||||| || || | ||||||||| |||||| ||||||| |||||||      
T  243937 ttcgtcttcttcaacattcggagcagtcacat---atacgcttctttattgatgaaattttttggtttaaaggagaatattcataacatttctttccatc 244033  T
Q  311 atgtacttcaagtgagcaactattgcgcaaattttttggccaagctcggacgctcttcaagcttaggtgtga 382  Q
    |||| |||  ||||||||||| ||   || ||||||||||||| |||||  |||||| ||  ||||||||||    
T  244034 atgtgcttagagtgagcaactgttctacatattttttggccaatctcgggtgctctttaaagttaggtgtga 244105  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 12181114 - 12181065
Alignment:
Q  7 aaaagttagaggatgcaagtgcatcccctcaatgataagtggctccgcca 56  Q
    |||||| || |||||||||||||||| ||||||| || ||||||||||||    
T  12181114 aaaagtcaggggatgcaagtgcatcctctcaatggtacgtggctccgcca 12181065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 12425542 - 12425493
Alignment:
Q  7 aaaagttagaggatgcaagtgcatcccctcaatgataagtggctccgcca 56  Q
    |||||| || |||||||||||||||| ||||||| || ||||||||||||    
T  12425542 aaaagtcaggggatgcaagtgcatcctctcaatggtacgtggctccgcca 12425493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 383
Target Start/End: Complemental strand, 40038471 - 40038334
Alignment:
Q  247 atacgtttctttgttg-tgaaaattctttgattaaaggagcatattcctaacattgctttccaatatgtacttcaagtgagcaactattgcgcaaatttt 345  Q
    |||||||||||||||| |||| ||  || | ||||||||| |||||| ||||||| |||||||| |||| |||  || | | |||| |||||   |||||    
T  40038471 atacgtttctttgttggtgaagatctttggtttaaaggagaatattcttaacatttctttccaacatgtgcttagagagggaaacttttgcgtggatttt 40038372  T
Q  346 ttggccaagctcggacgctcttcaagcttaggtgtgat 383  Q
    || ||||||||||| |  |||||||| ||| |||||||    
T  40038371 ttagccaagctcggccattcttcaaggttatgtgtgat 40038334  T

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