View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5277-Insertion-3 (Length: 510)
Name: NF5277-Insertion-3
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5277-Insertion-3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 8 - 509
Target Start/End: Complemental strand, 2742861 - 2742364
Alignment:
| Q |
8 |
gtcttgttctgactgtataggatttgatatatattatccatgttcatgctgtataaactgtgtttcagttgtttgtcacgactctgcaagtaaagagtgc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2742861 |
gtcttgttctgactgtataggatttgatatatattatccatgtttatgctgtataaactgtgtttcagttgtttctcacgactctgcaagtaaagagtgc |
2742762 |
T |
|
| Q |
108 |
aaaaggaaaatgggtgaggcctatgcattaagtaaagcactgaatggtttagttagtgaagatgatctgaaaaacttgaggaggaaattagacaagggtg |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2742761 |
aaaagaaaaatgggtgaggcctatgcattaagtaaagcactgaatggtttagttagtgaagatgatctgaaaaacttgaggaggaaattagacaagggtg |
2742662 |
T |
|
| Q |
208 |
aagagcaaggaactaaatctaaaagatctaggcagctactaattggctgaggaaattttttattggtttattatgcaagcttggaacattgcttagcgtt |
307 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2742661 |
aagaacaaggaactaaatctaaaagatctaggcagctactaattggctgagg-aattttttattggtttattatgcaagcttggaacattgcttagcatt |
2742563 |
T |
|
| Q |
308 |
ttcatgacattttgcatatatgtatataatgtagtgcatattaatattaccagtatcctacacttgtaagagtaacttgagaccaatactagcagccgtt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| | ||| |
|
|
| T |
2742562 |
ttcatgacattttgcatatatgtatataatgtagtgcatattaatattaccagtatcctagacttgtaggagtaacttgagaccaatactagcacctgtt |
2742463 |
T |
|
| Q |
408 |
gtcatgtaaggtcttatatcatgaaaaaattattctccctcactcttgtaattcagtgccattcttaaggaattgaaattaattattccataactcatgt |
507 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
2742462 |
gtcatgtaaggtcttatatcatg-aaaaattattct-cctcactcttgtaatgtagtgcaattcttagggaattg-aattaattattccataactcatgt |
2742366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University