View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5277-Insertion-4 (Length: 510)

Name: NF5277-Insertion-4
Description: NF5277
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5277-Insertion-4
NF5277-Insertion-4
[»] chr5 (24 HSPs)
chr5 (180-510)||(29417308-29417638)
chr5 (7-183)||(29416740-29416916)
chr5 (180-443)||(24654801-24655067)
chr5 (9-183)||(24655465-24655639)
chr5 (8-182)||(16486698-16486872)
chr5 (22-181)||(42840468-42840627)
chr5 (8-135)||(28019149-28019276)
chr5 (22-135)||(42777786-42777902)
chr5 (22-182)||(39724526-39724685)
chr5 (8-135)||(42800724-42800851)
chr5 (50-135)||(37408337-37408422)
chr5 (64-135)||(41996220-41996291)
chr5 (180-437)||(16487217-16487474)
chr5 (56-176)||(42413953-42414073)
chr5 (180-247)||(29418111-29418178)
chr5 (181-248)||(42835049-42835116)
chr5 (468-510)||(24654719-24654761)
chr5 (56-181)||(42411777-42411902)
chr5 (85-176)||(42413805-42413896)
chr5 (85-176)||(42730051-42730142)
chr5 (368-434)||(42777308-42777374)
chr5 (85-150)||(21699562-21699627)
chr5 (86-130)||(40549282-40549326)
chr5 (63-131)||(43322804-43322872)
[»] chr8 (2 HSPs)
chr8 (72-144)||(15631867-15631939)
chr8 (72-173)||(15600584-15600685)
[»] chr1 (3 HSPs)
chr1 (76-122)||(19219195-19219241)
chr1 (76-122)||(19225452-19225498)
chr1 (368-421)||(34287769-34287822)
[»] scaffold0134 (1 HSPs)
scaffold0134 (372-417)||(16972-17017)
[»] scaffold0129 (3 HSPs)
scaffold0129 (54-131)||(33538-33615)
scaffold0129 (368-400)||(17836-17868)
scaffold0129 (368-400)||(34232-34264)
[»] scaffold0068 (1 HSPs)
scaffold0068 (85-150)||(14283-14348)
[»] chr4 (1 HSPs)
chr4 (368-397)||(48742658-48742687)
[»] chr2 (1 HSPs)
chr2 (82-131)||(44937812-44937861)
[»] chr6 (1 HSPs)
chr6 (35-131)||(29012844-29012940)


Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 180 - 510
Target Start/End: Original strand, 29417308 - 29417638
Alignment:
Q  180 taggtccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaag 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29417308 taggtccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaag 29417407  T
Q  280 agttccatggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgacccagatatgccggcgctattttgatattcggccaatctaat 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29417408 agttccatggacactacctgaatctaaaagcctaaaaccagaatcatatctggcttgacctagatatgccggcgctattttgatattcggccaatctaat 29417507  T
Q  380 ttgaccttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttcttcgtaaggatgacagccataagaaggacaaaatgtttggtgtagga 479  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29417508 ttgaccttattctcaaacctcgaaccggaaacagaatacaactcaaatgtttcttcgaaaggatgacagccataagaaggacaaaatgtttggtgtagga 29417607  T
Q  480 ggagggaggtattatcataataagaatgatc 510  Q
    |||| ||||||||||||||||||||||||||    
T  29417608 ggagagaggtattatcataataagaatgatc 29417638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 7 - 183
Target Start/End: Original strand, 29416740 - 29416916
Alignment:
Q  7 atgaacaacatatctcccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccga 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29416740 atgaacaacatatctcccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccga 29416839  T
Q  107 gttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggacccatttaatagg 183  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29416840 gttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttattatgaaagcaatagacccatttaatagg 29416916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 180 - 443
Target Start/End: Complemental strand, 24655067 - 24654801
Alignment:
Q  180 taggtccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaag 279  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||    
T  24655067 taggttcagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcccgttgtgtgcacaaaccatataaag 24654968  T
Q  280 agttccatggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgaccc---agatatgccggcgctattttgatattcggccaatct 376  Q
    |||||||||||||||||||||| |||||||||||||||||   ||||||||| ||  | ||     |||| |||||  || ||||||||| |||||||||    
T  24654967 agttccatggacactacctgaacctaaaagcctaaaaccacgctcatatttgactccagccctataatatcccggctttaatttgatatttggccaatct 24654868  T
Q  377 aatttgaccttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttcttcgtaaggat 443  Q
    |||||||||||||| ||||| ||| |||||||||||||||||||||||||||| || |||| |||||    
T  24654867 aatttgaccttattttcaaaactcgaaccggaaacagaatacaactcaaatgtatcatcgtgaggat 24654801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 9 - 183
Target Start/End: Complemental strand, 24655639 - 24655465
Alignment:
Q  9 gaacaacatatctcccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagt 108  Q
    |||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24655639 gaacaacatatcgcccttctttccagctccgataggatactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagt 24655540  T
Q  109 tctcccaaaattgaaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggacccatttaatagg 183  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||| |||||||||    
T  24655539 tctcccaaaattgaaatgtgaaatgtacctgtctctttataacttactatgaaagcaatagacccgtttaatagg 24655465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 8 - 182
Target Start/End: Original strand, 16486698 - 16486872
Alignment:
Q  8 tgaacaacatatctcccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgag 107  Q
    ||||||||||||| ||||||||||| ||||| |||||| |||||||  |||| |||||||||| ||| ||||||||| ||||||||| ||||||||| |     
T  16486698 tgaacaacatatcacccttctttccggctccaataggatactcaagataaggtaagggccctaaaatgaagatcttaatccatgatttctttacaccaaa 16486797  T
Q  108 ttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggacccatttaatag 182  Q
    ||| || ||||||||||||||||||||||| |||||||| ||| |||  ||||||||||| ||||||| ||||||    
T  16486798 ttcacctaaaattgaaatgtgaaatgtacccgtctctatgtaatttaagatgaaagcaatagacccatctaatag 16486872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 22 - 181
Target Start/End: Original strand, 42840468 - 42840627
Alignment:
Q  22 cccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattg 121  Q
    |||||||| |||||||| || ||| ||||||||||||| ||||| || ||||||||||  |||||||||||||| |||||||| ||||| ||||||||||    
T  42840468 cccttcttccctgctccaattggatactcaaggcaaggtaagggaccaacaataaagactttagtccatgattcttttacaccaagttcacccaaaattg 42840567  T
Q  122 aaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggacccatttaata 181  Q
    ||||||||||||||  ||||||| ||||  ||  ||| ||||||| ||| ||||||||||    
T  42840568 aaatgtgaaatgtagttgtctctttatagtttgctataaaagcaacggatccatttaata 42840627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 8 - 135
Target Start/End: Complemental strand, 28019276 - 28019149
Alignment:
Q  8 tgaacaacatatctcccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgag 107  Q
    ||||||||||||| ||||||||||| |||||||| |||  |||||||||||| || || |||||||  ||||| ||||||||||||||||||||||  ||    
T  28019276 tgaacaacatatcacccttctttcccgctccgattggatgctcaaggcaaggtaatggtcctacaacgaagattttagtccatgattcctttacactaag 28019177  T
Q  108 ttctcccaaaattgaaatgtgaaatgta 135  Q
    ||| ||||| ||||||||||||| ||||    
T  28019176 ttcacccaagattgaaatgtgaattgta 28019149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 22 - 135
Target Start/End: Complemental strand, 42777902 - 42777786
Alignment:
Q  22 cccttctttcctgctccgatag---gacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaa 118  Q
    |||||||||||||||| ||||    || |||| || ||||| |||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||    
T  42777902 cccttctttcctgctcggataataagatactcgagacaaggtaagggccctacaatgaagatcttagtccatgattcttttacaccgagttcgcctaaaa 42777803  T
Q  119 ttgaaatgtgaaatgta 135  Q
    |||||||||||||||||    
T  42777802 ttgaaatgtgaaatgta 42777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 22 - 182
Target Start/End: Original strand, 39724526 - 39724685
Alignment:
Q  22 cccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattg 121  Q
    |||||||| || |||||||| ||| | ||||||||||| || || || ||||| ||||  |||||||||||||| |||| ||||||||| ||||||||||    
T  39724526 cccttcttacccgctccgattggataatcaaggcaaggtaaaggtccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattg 39724625  T
Q  122 aaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggacccatttaatag 182  Q
    | ||||||||||||| || | | |||| | |||  ||||||||||| ||||||||||||||    
T  39724626 atatgtgaaatgtacatgccccgatat-atttaaaatgaaagcaatagacccatttaatag 39724685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 8 - 135
Target Start/End: Original strand, 42800724 - 42800851
Alignment:
Q  8 tgaacaacatatctcccttctttcctgctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgag 107  Q
    |||| |||| ||| ||||||||||| ||||||| |||| | ||||||||||| || ||||||||  | ||||| ||||||||||||||| ||||| ||||    
T  42800724 tgaaaaacagatcacccttctttcccgctccgacaggatagtcaaggcaaggtaaaggccctacggtgaagattttagtccatgattccattacatcgag 42800823  T
Q  108 ttctcccaaaattgaaatgtgaaatgta 135  Q
    ||   | |||||| ||||||||||||||    
T  42800824 tttgtctaaaattaaaatgtgaaatgta 42800851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 37408337 - 37408422
Alignment:
Q  50 caaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 135  Q
    |||||||||| ||||| || ||||  || | ||| ||||||||||||||||||||||| || ||||||||||||||||||||||||    
T  37408337 caaggcaaggtaagggtccaacaacgaatagcttcgtccatgattcctttacaccgagctcacccaaaattgaaatgtgaaatgta 37408422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 64 - 135
Target Start/End: Original strand, 41996220 - 41996291
Alignment:
Q  64 ggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgta 135  Q
    ||||| ||||| |||| |||||||||||||||||||||| | ||||| ||||||||| ||||||||||||||    
T  41996220 ggcccaacaatgaagagcttagtccatgattcctttacatcaagttcacccaaaattaaaatgtgaaatgta 41996291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 437
Target Start/End: Original strand, 16487217 - 16487474
Alignment:
Q  180 taggtccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataaaattcctgttgggtgcacaaaccagataaag 279  Q
    ||||| ||||||| |||||||| ||||||||  | ||| ||||| |||||||||||||||| |||| || ||||   | || |||||||| |||| | ||    
T  16487217 taggttcagaatctaaagggctgggaggaatgtgcttaaattccatagtagatggattccacaataaaatattcacatgggatgcacaaaacagacacag 16487316  T
Q  280 agttccatggacactacctgaatctaaaagcctaaaaccagaatcatatttggcttgacccagatatgccggcgctattttgatattcggccaatctaat 379  Q
    ||||||| | || || || ||  |||| |   |||||||||||||||| |  | |||| || |||||   ||  ||| ||||| | | ||||||||||||    
T  16487317 agttccaagaacgctgccagatcctaatatattaaaaccagaatcatactccgtttgatcccgatatataggatctaatttgacacttggccaatctaat 16487416  T
Q  380 ttgaccttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttcttcgt 437  Q
    |||| | ||||||||||||||  ||| | || ||||||||| ||||||||||| ||||    
T  16487417 ttgatcctattctcaaacctcttaccagcaagagaatacaaatcaaatgtttcatcgt 16487474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 42414073 - 42413953
Alignment:
Q  56 aaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttat 155  Q
    |||| ||||| || ||||||||||  ||||||||||| ||||||||||| | ||| ||||||||||||||||||| ||||  ||||||  ||||| |||     
T  42414073 aaggtaagggtccaacaataaagagtttagtccatgactcctttacaccaaattcgcccaaaattgaaatgtgaattgtaaatgtctcagtataatttaa 42413974  T
Q  156 tatgaaagcaatggacccatt 176  Q
     ||| ||||||| || |||||    
T  42413973 gatgtaagcaatagagccatt 42413953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 29418111 - 29418178
Alignment:
Q  180 taggtccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatata 247  Q
    |||||||| ||||||||||| | |||||||| || ||| |||||||||| | ||||||||||||||||    
T  29418111 taggtccaaaatcaaaagggttgggaggaatgagcttaaattccttagtggctggattccataatata 29418178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 42835049 - 42835116
Alignment:
Q  181 aggtccagaatcaaaagggctaggaggaataagtttagattccttagtagatggattccataatataa 248  Q
    |||| |||||||||||||||| |||||||  || ||| |||||||| ||||||||||||| |||||||    
T  42835049 aggttcagaatcaaaagggctgggaggaagcagcttaaattccttattagatggattccacaatataa 42835116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 510
Target Start/End: Complemental strand, 24654761 - 24654719
Alignment:
Q  468 tttggtgtaggaggagggaggtattatcataataagaatgatc 510  Q
    |||||||||||||||| ||||||| ||||||||||||||||||    
T  24654761 tttggtgtaggaggagagaggtatcatcataataagaatgatc 24654719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 56 - 181
Target Start/End: Complemental strand, 42411902 - 42411777
Alignment:
Q  56 aaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttat 155  Q
    |||| |||||||| ||||| ||||  |||||||||||||| ||||  || | |||||||||||||||||| |||||| ||  ||||||  |||||  ||     
T  42411902 aaggtaagggcccgacaatgaagagtttagtccatgattcttttattccaatttctcccaaaattgaaatatgaaatatagatgtctccttataagctaa 42411803  T
Q  156 tatgaaagcaatggacccatttaata 181  Q
     |||||||||||  ||||||| ||||    
T  42411802 gatgaaagcaataaacccattcaata 42411777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 42413896 - 42413805
Alignment:
Q  85 gtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggacccatt 176  Q
    |||||||| ||||||||||| | |||  |||||||||||||||||| ||||  ||||||  ||||| |||  ||| ||||||| ||||||||    
T  42413896 gtccatgactcctttacaccaaattcgtccaaaattgaaatgtgaattgtaaatgtctcagtataatttaagatgtaagcaatagacccatt 42413805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 85 - 176
Target Start/End: Complemental strand, 42730142 - 42730051
Alignment:
Q  85 gtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggacccatt 176  Q
    |||||||| ||||||| |||||| || ||||||||| ||||||||| | ||  |||||||||||||  ||  ||||||||||| || |||||    
T  42730142 gtccatgaatcctttataccgaggtcacccaaaattaaaatgtgaagtatagatgtctctatataatgtaagatgaaagcaatagatccatt 42730051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 368 - 434
Target Start/End: Complemental strand, 42777374 - 42777308
Alignment:
Q  368 ggccaatctaatttgaccttattctcaaacctcaaaccggaaacagaatacaactcaaatgtttctt 434  Q
    ||||||||||||||| || ||||  ||||||||  ||| ||||||||||| ||||||||| ||||||    
T  42777374 ggccaatctaatttggccctatttccaaacctctcaccagaaacagaatataactcaaatctttctt 42777308  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 21699627 - 21699562
Alignment:
Q  85 gtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctctatataa 150  Q
    |||||||| ||||||| |||||| || ||||||||| ||||||||| | ||  |||||||||||||    
T  21699627 gtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataa 21699562  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 40549326 - 40549282
Alignment:
Q  86 tccatgattcctttacaccgagttctcccaaaattgaaatgtgaa 130  Q
    ||||||||||||| ||||||| ||| ||||||||||| |||||||    
T  40549326 tccatgattccttcacaccgacttcacccaaaattgatatgtgaa 40549282  T

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Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 131
Target Start/End: Complemental strand, 43322872 - 43322804
Alignment:
Q  63 gggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaa 131  Q
    |||||| ||||||||||  ||  ||||| ||| ||||||||||||||| |||||||| ||||| |||||    
T  43322872 gggcccaacaataaagagtttgatccataatttctttacaccgagttcacccaaaatcgaaatatgaaa 43322804  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 15631867 - 15631939
Alignment:
Q  72 aataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctct 144  Q
    ||||||||  ||||||||||||||  |||||||| |||| |||||||||||||||||| |||||  |||||||    
T  15631867 aataaagagtttagtccatgattctattacaccgggttcacccaaaattgaaatgtgatatgtagatgtctct 15631939  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 15600584 - 15600685
Alignment:
Q  72 aataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctctatataacttattatgaaagcaatggac 171  Q
    ||||||||  ||||||||||||||  |||||||| |||| ||||||||||| |||||| |||||  |||||||  |||| ||   ||||||||||| |||    
T  15600584 aataaagagtttagtccatgattctattacaccgggttcacccaaaattgagatgtgatatgtagatgtctcttcataatttgagatgaaagcaatagac 15600683  T
Q  172 cc 173  Q
    ||    
T  15600684 cc 15600685  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 19219195 - 19219241
Alignment:
Q  76 aagatcttagtccatgattcctttacaccgagttctcccaaaattga 122  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||||    
T  19219195 aagagcttagtccatgattccttgacaccgagttcacccaaaattga 19219241  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 76 - 122
Target Start/End: Original strand, 19225452 - 19225498
Alignment:
Q  76 aagatcttagtccatgattcctttacaccgagttctcccaaaattga 122  Q
    |||| |||||||||||||||||| |||||||| || |||||||||||    
T  19225452 aagagcttagtccatgattccttgacaccgagctcacccaaaattga 19225498  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 421
Target Start/End: Complemental strand, 34287822 - 34287769
Alignment:
Q  368 ggccaatctaatttgaccttattctcaaacctcaaaccggaaacagaatacaac 421  Q
    ||||||||||||||||||||||| |||||||||  ||  |||| ||||||||||    
T  34287822 ggccaatctaatttgaccttattatcaaacctctcactagaaagagaatacaac 34287769  T

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Target: scaffold0134 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 417
Target Start/End: Original strand, 16972 - 17017
Alignment:
Q  372 aatctaatttgaccttattctcaaacctcaaaccggaaacagaata 417  Q
    |||||||||||||||||||||||||||||  ||| |||| ||||||    
T  16972 aatctaatttgaccttattctcaaacctctcaccagaaagagaata 17017  T

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Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 33538 - 33615
Alignment:
Q  54 gcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaa 131  Q
    |||||| || ||||| | ||||||||  |||||||| || ||||| ||||| ||||| |||||||| |||||||||||    
T  33538 gcaaggtaaaggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaa 33615  T

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Target: scaffold0129; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 17836 - 17868
Alignment:
Q  368 ggccaatctaatttgaccttattctcaaacctc 400  Q
    ||||||| |||||||||||||||||||||||||    
T  17836 ggccaatttaatttgaccttattctcaaacctc 17868  T

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Target: scaffold0129; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 368 - 400
Target Start/End: Original strand, 34232 - 34264
Alignment:
Q  368 ggccaatctaatttgaccttattctcaaacctc 400  Q
    |||||||| ||||||||||||||||||||||||    
T  34232 ggccaatcaaatttgaccttattctcaaacctc 34264  T

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Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 14283 - 14348
Alignment:
Q  85 gtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaatgtacctgtctctatataa 150  Q
    |||||||| ||||||| |||||| || ||||||||| ||||||||| | ||  |||||||||||||    
T  14283 gtccatgaatcctttataccgagctcacccaaaattaaaatgtgaagtatagatgtctctatataa 14348  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 368 - 397
Target Start/End: Original strand, 48742658 - 48742687
Alignment:
Q  368 ggccaatctaatttgaccttattctcaaac 397  Q
    ||||||||||||||||||||||||||||||    
T  48742658 ggccaatctaatttgaccttattctcaaac 48742687  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Original strand, 44937812 - 44937861
Alignment:
Q  82 ttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaa 131  Q
    |||||||||||||| || || |||||||| ||||||||||| ||||||||    
T  44937812 ttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaa 44937861  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 29012940 - 29012844
Alignment:
Q  35 ctccgataggacactcaaggcaaggaaagggccctacaataaagatcttagtccatgattcctttacaccgagttctcccaaaattgaaatgtgaaa 131  Q
    |||||||||||| || || |||||  || || || ||||| ||||  || |||||||||||||| |||||||  || ||||||||||| ||||||||    
T  29012940 ctccgataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaa 29012844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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